Job Description Q22146 Confidence 100.00% Date Sat Apr 13 13:24:31 BST 2013 Rank 192 Aligned Residues 283 % Identity 17% Template c2kulA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase vrk1; PDBTitle: solution structure of human vaccinia related kinase 1(vrk1) Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.																				.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.																				.	.	.	.	.	.
Query Sequence		T	P	I	S	A	A	S	G	A	K	I	R	R	P	M	E	R	S	P	W	L	I	N	H	D	S	I	V	A	N	K	K	L	G	E	G	A	F	G	D	V	F	I	A	E	L	D	Q	G	G	K	.	.	.	.	Q	E	V	A	V	K	T	M	R	A	E	A	T	R	E	A	R	L	R	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.																				.	.	.	.	.	.
Alig confidence																																																					.	.	.	.																				.	.	.	.	.	.
Template Conservation
Template Sequence		R	Q	S	S	A	K	R	H	L	A	E	Q	F	A	V	G	E	I	I	T	D	M	A	K	K	E	W	K	V	G	L	P	I	G	Q	G	G	F	G	C	I	Y	L	A	D	M	N	S	S	E	S	V	G	S	D	A	P	C	V	V	K	V	E	P	S	D	N	G	P	L	F	T	E	L	K	F	Y	Q	R	A
Template Known Secondary structure													S	S	S	T	T						T	T	S												S	S	S	S	S									S	S				S	S	S	S								T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
						175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure		.	.	.	.																									.	.	.	.																									.	.
Query SS confidence		.	.	.	.																									.	.	.	.																									.	.
Query Sequence		.	.	.	.	F	M	K	E	A	R	L	M	R	K	Y	Q	H	K	H	V	V	K	L	I	G	V	A	I	.	.	.	.	H	E	H	P	L	M	I	V	M	E	Y	C	P	N	G	S	L	L	S	H	L	K	K	N	.	.	K	V	S	L	I	E	K	L	R	F	T	T	E	A	A	D	G	I	A	Y	L	E
Query Conservation		.	.	.	.																									.	.	.	.																									.	.
Alig confidence		.	.	.	.																									.	.	.	.													.												.	.
Template Conservation																																														.
Template Sequence		A	K	P	E	Q	I	Q	K	W	I	R	T	R	K	L	K	Y	L	G	V	P	K	Y	W	G	S	G	L	H	D	K	N	G	K	S	Y	R	F	M	I	M	D	R	F	.	G	S	D	L	Q	K	I	Y	E	A	N	A	K	R	F	S	R	K	T	V	L	Q	L	S	L	R	I	L	D	I	L	E	Y	I	H
Template Known Secondary structure														T	T																		T	T												.											T	T	T
Template Predicted Secondary structure																																														.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.									.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																									.	.																					.	.	.	.	.	.	.	.
Query SS confidence																									.	.																					.	.	.	.	.	.	.	.
Query Sequence		R	S	K	C	I	H	R	D	I	A	A	R	N	C	L	L	S	A	K	N	E	L	K	.	.	I	S	D	F	G	M	S	D	N	K	D	E	I	K	D	E	T	L	E	K	.	.	.	.	.	.	.	.	V	P	I	K	W	L	A	P	E	T	M	Q	E	K	V	Y	T	H	K	T	D	I	W	T	F	G	V
Query Conservation																									.	.																					.	.	.	.	.	.	.	.
Alig confidence																									.	.																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	H	E	Y	V	H	G	D	I	K	A	S	N	L	L	L	N	Y	K	N	P	D	Q	V	Y	L	V	D	Y	G	L	A	Y	R	Y	C	P	E	G	V	H	K	E	Y	K	E	D	P	K	R	C	H	D	G	T	I	E	F	T	S	I	D	A	H	N	G	V	A	P	S	R	R	G	D	L	E	I	L	G	Y
Template Known Secondary structure		T	T	T	B			S				G	G	G					T	T										G	G	G			B	S	S	S	T	T					S				S	S				S	S		T	T	T	S							T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.										.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.
Query Sequence		L	V	W	E	I	Y	S	D	G	A	E	P	Y	P	G	L	T	K	.	.	.	.	.	.	.	.	.	I	Q	T	R	A	K	I	V	V	N	D	Y	R	M	K	M	P	D	G	T	H	P	T	V	A	D	V	V	T	G	T	C	W	Q	K	N	P	E	K	R	S	T	M	D	S	I	H	K	K	L	R	E	F
Query Conservation																				.	.	.	.	.	.	.	.	.
Alig confidence									.											.	.	.	.	.	.	.	.	.																													.
Template Conservation									.																																																.
Template Sequence		C	M	I	Q	W	L	T	.	G	H	L	P	W	E	D	N	L	K	D	P	K	Y	V	R	D	S	K	I	R	Y	R	E	N	I	A	S	L	M	D	K	C	F	P	E	K	N	K	P	G	E	I	A	K	Y	M	.	E	T	V	K	L	L	D	Y	T	E	K	P	L	Y	E	N	L	R	D	I	L	L	Q	G
Template Known Secondary structure									.	S	S		T	T	T	T	T	T	T															T							T	T	S		S	S											.						T	T	T	T	S	S
Template Predicted Secondary structure									.																																																.
Template SS confidence
		250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		386	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	S	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	A	I	G
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D