 |
| Job Description | Q22146 | | Confidence | 99.81% | Date | Sat Apr 13 13:24:31 BST 2013 |
| Rank | 339 | Aligned Residues | 112 |
| % Identity | 21% | Template | c2gsbA_ |
| PDB info |
PDB header:signaling protein | Chain: A: PDB Molecule:ras gtpase-activating protein 1; |
PDBTitle: solution structure of the second sh2 domain of human ras2 gtpase-activating protein 1
|
| Resolution | UNK |
|
 |
|   |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | |
|
|
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
S | S | N | N | D | A | S | V | T | D | D | I | R | S | A | E | Y | Y | H | G | M | V | P | R | Q | D | A | E | G | F | L | K | . |
. |
. |
R | E | G | D | F | L | V | R | K | T | E | Q | M | P | G | K | V | V | L | A | M | S | V | R | V | T | D | E | L | C | R | H | F | M | L | N | M | D | P | T | S | N | K | F | Y |
| Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |
|   |
|   |
|   |   |
|   |   |   |
|   | . | . | . |   |   |
|   |
|
|
|
|   |
|   |   |   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |
|
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |
|
|
| . | . | . |   |   |   |   |   |
|   |
|   |   |
|   | . | . |   |   |   |   |   |   |   |
| Template Sequence |   |
S | S | G | S | S | G | R | E | E | D | P | H | E | G | K | I | W | F | H | G | K | I | S | K | Q | E | A | Y | N | L | L | M | T | V | G | Q | V | C | S | F | L | V | R | P | S | D | N | T | P | G | D | Y | S | L | Y | F | . |
. |
. |
R | T | N | E | N | I | Q | R | F | K | I | C | . |
. |
P | T | P | N | N | Q | F |
| Template Known Secondary structure |   |
|
| S |
|
| S | S |
|
|
| S | G | G | G |
| S | S | B |
|
| S | S |
|  |  |  |  |  |  |  |  |  |  | T |
|
| S | S |  |  |  |  |  |  |
| S | S | S | T | T |
|  |  |  |  |  | . | . | . |  |
| S | S |
| B |
|
|
|
|  |  | . | . |  |  | T | T | T |  |  |
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  | . | . | . |  |
|
|
|
|  |  |  |  |  |  |  | . | . |  |  |
|
|
|  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
. | . | 60 | . | . | . | . | . | . | . | . | . | |
|
70 | . | . | . | . | . | . |
|   |
|   |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |
| Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
F | E | H | T | H | Q | E | S | T | I | S | E | L | I | N | W | H | M | T | T | K | T | P | I | S | A | A | S | G | A | K | I | R | R | P | M | E | R | S | P |
| Query Conservation |   |
  |   |   |   |   |   |
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |   |   |
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |   |   |   |
|
| Template Sequence |   |
M | M | G | G | R | Y | Y | N | S | I | G | D | I | I | D | H | Y | R | K | E | Q | I | V | E | G | Y | Y | L | K | E | P | V | P | M | Q | D | Q | S | G | P |
| Template Known Secondary structure |   |
 |  | S | S |
|
| B | S |
|  |  |  |  |  |  |  |  | T | T | S |
| S | B | T | T | B |
|
|
|
|
|
|
|
|
|
|
|
| S | S |
| Template Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
Phyre2 is part of Genome3D |
|