Job Description Q22146 Confidence 100.00% Date Sat Apr 13 13:24:31 BST 2013 Rank 90 Aligned Residues 244 % Identity 20% Template c2a1aB_ PDB info PDB header:protein synthesis/transferase Chain: B: PDB Molecule:interferon-induced, double-stranded rna-activated protein PDBTitle: pkr kinase domain-eif2alpha complex Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	S	I	V	A	N	K	K	L	G	E	G	A	F	G	D	V	F	I	A	E	L	D	Q	G	G	K	Q	E	V	A	V	K	T	M	R	A	E	A	T	R	E	A	R	L	R	F	M	K	E	A	R	L	M	R	K	Y	Q	H	K	H	V	V	K	L	I	G	V	A	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																		.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																		.	.	.	.	.
Template Sequence		M	D	F	K	E	I	E	L	I	G	S	G	G	F	G	Q	V	F	K	A	K	.	H	R	I	D	G	K	T	Y	V	I	K	R	V	K	Y	N	N	.	.	.	.	.	E	K	A	E	R	E	V	K	A	L	A	K	L	D	H	V	N	I	V	H	Y	N	G	C	W	D	G	F	D	Y	D	P	E	T	S	S
Template Known Secondary structure														S	S								.		S	S	S													S	.	.	.	.	.	G	G	G	G							T	T				T	T	B														T	T
Template Predicted Secondary structure																							.																		.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.						.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
			198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure		.																									.	.	.
Query SS confidence		.																									.	.	.
Query Sequence		.	I	H	E	H	P	L	M	I	V	M	E	Y	C	P	N	G	S	L	L	S	H	L	K	K	.	.	.	N	K	V	S	L	I	E	K	L	R	F	T	T	E	A	A	D	G	I	A	Y	L	E	R	S	K	C	I	H	R	D	I	A	A	R	N	C	L	L	S	A	K	N	E	L	K	I	S	D	F	G	M
Query Conservation		.																									.	.	.
Alig confidence		.																									.	.	.
Template Conservation
Template Sequence		R	S	K	T	K	C	L	F	I	Q	M	E	F	C	D	K	G	T	L	E	Q	W	I	E	K	R	R	G	E	K	L	D	K	V	L	A	L	E	L	F	E	Q	I	T	K	G	V	D	Y	I	H	S	K	K	L	I	N	R	D	L	K	P	S	N	I	F	L	V	D	T	K	Q	V	K	I	G	D	F	G	L
Template Known Secondary structure																T	T		B									T	T	S																								T	T				T	T		S	G	G	G						T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	N	K	D	E	I	K	D	E	T	L	E	K	V	P	I	K	W	L	A	P	E	T	M	Q	E	K	V	Y	T	H	K	T	D	I	W	T	F	G	V	L	V	W	E	I	Y	S	D	G	A	E	P	Y	P	G	L	T	K	I	Q	T	R	A	K	I	V	V	N	D	Y	R	M	K	M	P	D	G	T	H
Query Conservation
Alig confidence															.																																																			.	.	.	.	.	.	.
Template Conservation															.																																																			.	.	.	.	.	.	.
Template Sequence		V	T	S	L	K	N	D	G	K	R	R	S	K	.	G	T	L	R	Y	M	S	P	E	Q	I	S	S	Q	D	Y	G	K	E	V	D	L	Y	A	L	G	L	I	L	A	E	L	L	H	V	C	D	T	A	F	E	T	S	K	F	F	T	D	L	R	.	.	.	.	.	.	.	D	G	I	I	S	D	I	F	D
Template Known Secondary structure					S	S			S						.	S			T	T	S						S		S				T																S			S	S													.	.	.	.	.	.	.	T	T				T	T	S
Template Predicted Secondary structure															.																																																			.	.	.	.	.	.	.
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.								.	500	.	.	.	.	.	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	V	A	D	V	V	T	G	T	C	W	Q	K	N	P	E	K	R	S	T	M	D	S	I	H	K	K	L	R	E	F	Y	E
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		K	K	E	K	T	L	L	.	Q	K	L	L	S	K	K	P	E	D	R	P	N	T	S	E	I	L	R	T	L	T	V	W	K	K
Template Known Secondary structure									.				T		S	S	G	G	G	S
Template Predicted Secondary structure									.
Template SS confidence
		509	510	.	.	.	.	.		.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D