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Job DescriptionQ22146
Confidence100.00%DateSat Apr 13 13:24:31 BST 2013
Rank136Aligned Residues256
% Identity21%Templatec1zrzA_
PDB info PDB header:transferaseChain: A: PDB Molecule:protein kinase c, iota; PDBTitle: crystal structure of the catalytic domain of atypical2 protein kinase c-iota
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   126...130.........140.........150.........160....... ..170.........180.... .....190.........200..
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Query Sequence  INHDSIVANKKLGEGAFGDVFIAELDQGGKQEVAVKTMRAEA. . TREARLRFMKEARLMRK. YQHKHVVKLIGVAIHEHP
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVR. LKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESR
Template Known Secondary structure 

STT
SS.TTT

GGG

STTTTTTTSSTTB


B
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   240.........250.........260... ......270.........280.........290.........300.........310........
 
   203......210......... 220.........230.........240.........250.........260.........270.........280.
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Query Sequence  LMIVMEYCPNGSLLSHL. KKNKVSLIEKLRFTTEAADGIAYLERSKCIHRDIAARNCLLSAKNELKISDFGMSDNKDEIK
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Template Sequence  LFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG
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S
BTTSS

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TT
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   319320.........330.........340.........350.........360.........370.........380.........390........
 
   282.......290.........300.........310.........320.........330.........340.........350.........360.
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Query Sequence  DETLEKVPIKWLAPETMQEKVYTHKTDIWTFGVLVWEIYSDGAEPYPGLTKIQTRAKIVVNDYRMKMPDGTHPTVADVVT
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Template Sequence  DTTSFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA. GRSPFDQNTEDYLFQVILE. . KQIRIPRSMSVKAASVL.
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B


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   399400.........410.........420.........430........ .440.........450....... ..460.........470....
 
   362.......370.........380.......
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Query Sequence  GTCWQKNPEKRSTMDSIHKKLREFYE
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Template Sequence  KSFLNKDPKERLGCLPQTG. FADIQG
Template Known Secondary structure  T
SSSTTSTTTSTTT.
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   485....490.........500... ......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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