Job Description Q9XUS7 Confidence 45.73% Date Fri May 3 21:43:12 BST 2013 Rank 308 Aligned Residues 108 % Identity 12% Template c4dvyP_ PDB info PDB header:oncoprotein Chain: P: PDB Molecule:cytotoxicity-associated immunodominant antigen; PDBTitle: crystal structure of the helicobacter pylori caga oncoprotein Resolution 3.30 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	F	E	K	L	G	Q	F	S	K	E	K	A	A	I	E	E	E	Y	S	T	K	L	R	S	L	A	K	K	Y	A	K	K	S	E	E	D	D	E	I	L	K	S	V	S	Y	T	S	S	F	N	S	F	L	Q	Q	L	D	Q	I	A	T	R	H	Q	T	S	A	E	H	I	R	G	G	V	V	S	Y	V
Query Conservation
Alig confidence																																																				.	.	.	.
Template Conservation																																																				.	.	.	.
Template Sequence		K	A	Q	K	D	L	E	K	S	L	R	K	R	E	H	L	E	K	E	V	E	K	K	L	E	S	K	S	N	K	M	E	A	K	A	Q	A	N	S	Q	K	D	E	I	F	A	L	I	N	K	.	.	.	.	E	A	N	R	D	A	R	A	I	A	Y	T	Q	N	L	K	G	I	K	R	E	L	S	D	K	L
Template Known Secondary structure																																S	S																			.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.
Template SS confidence
		614	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.					.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	K	T	C	Q	M	R	S	S	R	K	N	A	I	N	D	L	K	T	I	N	D	K	L	E	D	Q	I	N	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	I	S	K	D	L	K	D	F	S	K	S	F	D	E	F	K	E	E	T	L	K	A	L	K	G	S	V	K	D	L
Template Known Secondary structure																																	S
Template Predicted Secondary structure
Template SS confidence
		693	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D