Job Description Q9XXE5 Confidence 98.88% Date Sat Apr 13 12:56:17 BST 2013 Rank 406 Aligned Residues 80 % Identity 21% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.									.	.	.	80	.
Predicted Secondary structure																									.	.																																											.	.	.	.	.	.	.	.
Query SS confidence																									.	.																																											.	.	.	.	.	.	.	.
Query Sequence		S	I	E	K	E	P	Y	Y	H	G	F	L	P	R	E	D	V	K	T	V	L	K	N	.	.	N	G	D	F	V	I	R	I	S	E	P	Q	A	G	S	P	R	S	N	I	L	S	V	M	H	C	V	P	P	M	E	E	E	I	K	H	Y	V	I	K	T	K	.	.	.	.	.	.	.	.	G	D	K	I	F
Query Conservation																									.	.																																											.	.	.	.	.	.	.	.
Alig confidence											.														.	.															.	.	.										.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation											.																														.	.	.										.	.	.	.
Template Sequence		R	V	I	N	H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	.	.	.	H	L	A	I	T	W	K	L	D	.	.	.	.	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V
Template Known Secondary structure							T	T			.												T	T	S		T	T								S	S		T	T	.	.	.										.	.	.	.	T	T											S		S	S	T	T	S			S
Template Predicted Secondary structure											.																														.	.	.										.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	K	V	S	F	L	S	I	P	E	M	V	E	W	H	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	G	Q	R	Y	H	D	L	D	Q	I	I	V	E	Y	L	Q
Template Known Secondary structure			T	T				S	S								T
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D