Job Description Q9XXE5 Confidence 99.80% Date Sat Apr 13 12:56:17 BST 2013 Rank 122 Aligned Residues 115 % Identity 22% Template c3mi9A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:cell division protein kinase 9; PDBTitle: crystal structure of hiv-1 tat complexed with human p-tefb Resolution 2.10 Å

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		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	I	E	P	L	K	K	L	G	E	G	A	F	G	E	V	M	M	G	T	M	K	F	R	K	G	G	K	S	V	Q	V	A	I	K	Q	A	K	L	S	N	L	T	K	E	Q	I	K	E	F	M	G	E	A	R	V	M	R	S	L	S	H	P	H	V	V	R	F	Y	G	V	P	R	R	R	V	N	V	A
Query Conservation
Alig confidence																									.	.	.	.
Template Conservation																									.	.	.	.
Template Sequence		S	K	Y	E	K	L	A	K	I	G	Q	G	T	F	G	E	V	F	K	A	R	H	R	.	.	.	.	K	T	G	Q	K	V	A	L	K	K	V	L	M	E	N	E	K	E	G	F	P	I	T	A	L	R	E	I	K	I	L	Q	L	L	K	H	E	N	V	V	N	L	I	E	I	C	R	T	K	G	S	I	Y
Template Known Secondary structure		G	G								S	S		S	T	T	S							T	.	.	.	.	T	T												S	S		S	S	S	S																	T	T	B
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		204	.							.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		L	C	.	.	.	.	.	.	R	S	L	N	E	F	L	A	K	C	H	R	K	L	R	C	A	T	P	F	F	V	C	M	S	V	N	W	L	S	V	L	N	E	L	R	V
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	F	D	F	C	E	H	D	L	A	G	L	L	S	N	V	L	V	K	F	T	L	S	E	I	K	R	V	M	Q	M	L	L	N	G	L	Y	Y	I	H	R	N	K	I
Template Known Secondary structure								S										T	T	S																								T	T
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D