Job Description Q22245 Confidence 94.54% Date Sun Jun 30 11:14:08 BST 2013 Rank 446 Aligned Residues 175 % Identity 17% Template c3tdvB_ PDB info PDB header:transferase Chain: B: PDB Molecule:gentamicin resistance protein; PDBTitle: structure of the gdp complex of wild-type aminoglycoside 2'-2 phosphotransferase-iiia Resolution 2.20 Å

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		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		K	K	L	G	E	G	A	F	G	E	V	S	S	G	V	M	K	F	K	K	G	M	K	T	V	Q	V	A	I	K	Q	V	K	L	D	K	T	G	K	A	K	I	K	D	F	L	A	E	A	R	T	M	R	K	L	G	H	Q	.	.
Query Conservation																																																												.	.
Alig confidence																.	.	.	.	.	.	.	.	.											.	.	.	.																						.	.
Template Conservation																.	.	.	.	.	.	.	.	.											.	.	.	.
Template Sequence		E	S	L	G	E	G	F	R	N	Y	A	I	L	V	.	.	.	.	.	.	.	.	.	N	G	D	W	V	F	R	F	P	K	.	.	.	.	S	Q	Q	G	A	D	E	L	N	K	E	I	Q	L	L	P	L	L	V	G	C	V	K
Template Known Secondary structure								S	S							.	.	.	.	.	.	.	.	.	T	T	T							S	.	.	.	.	S																		G	G	G		S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.											.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.										.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
			192	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure		.														.																																													.
Query SS confidence		.														.																																													.
Query Sequence		.	N	I	I	K	F	Y	G	V	G	V	L	Q	E	.	P	L	Y	L	V	M	E	L	A	V	N	G	A	L	D	S	F	L	K	K	N	E	D	L	S	V	D	K	K	T	E	M	I	L	Q	A	A	W	G	L	E	Y	I	H	.
Query Conservation		.														.																																													.
Alig confidence		.														.																					.	.																							.
Template Conservation																																					.	.
Template Sequence		V	N	I	P	Q	Y	V	Y	I	G	K	R	S	D	G	N	P	F	V	G	Y	R	K	V	Q	G	Q	I	L	G	E	D	G	M	A	.	.	V	F	P	D	D	A	K	D	R	L	A	L	Q	L	A	E	F	M	N	E	L	S	A
Template Known Secondary structure		S	B											T	T	S											S										.	.	T
Template Predicted Secondary structure																																					.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
																																																													249
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	P	V	E	T	A	I	S	A	G	V	P	V	T	N	L	K	N	K	I	L	L	L	S	E	A	V	E	D	Q	V	F	P	L	L	D	E	S	L	R	D	Y	L	T	L	R	F	Q	S	Y	M	T	H	P	V	Y	T	R	Y	T
Template Known Secondary structure		S								T	T			B																		T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.						.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.
Query SS confidence																					.	.	.	.	.
Query Sequence		K	P	M	L	H	R	D	I	A	A	R	N	C	L	Y	T	D	G	K	.	.	.	.	.	V	K	I	S	D	F	G	L	T	R	N	G	T	V	Y	Q	I	K	P	N	T	K	S	P	I	R	W	L	A	I	E	T	I	K	T	M
Query Conservation																					.	.	.	.	.
Alig confidence																					.	.	.	.	.
Template Conservation
Template Sequence		P	R	L	I	H	G	D	L	S	P	D	H	F	L	T	N	L	N	S	R	Q	T	P	L	T	G	I	I	D	F	G	D	A	A	I	S	D	P	D	Y	D	Y	V	Y	L	L	E	D	C	G	E	L	F	T	R	Q	V	M	A	Y
Template Known Secondary structure							S				G	G	G					T	T		S	S		S								T	T						G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	C	S	E	K	T	D	V	W	A	Y	G	V	L	C	W	E	I	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	E	V	D	L	D	T	H	I	R	K	V	S	L	F	V	T	F
Template Known Secondary structure		T	T		S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D