Job Description Q22245 Confidence 100.00% Date Sun Jun 30 11:14:08 BST 2013 Rank 265 Aligned Residues 236 % Identity 18% Template c3rgfA_ PDB info PDB header:transferase,transcription Chain: A: PDB Molecule:cyclin-dependent kinase 8; PDBTitle: crystal structure of human cdk8/cycc Resolution 2.20 Å

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	I	T	I	H	K	K	L	G	E	G	A	F	G	E	V	S	S	G	V	M	K	F	K	K	G	M	K	T	V	Q	V	A	I	K	Q	V	K	L	D	K	T	G	K	A	K	I	K	D	F	L	A	E	A	R	T	M	R	K
Query Conservation
Alig confidence																									.	.																					.	.	.	.
Template Conservation																									.	.																					.	.	.	.
Template Sequence		E	R	V	E	D	L	F	E	Y	E	G	C	K	V	G	H	V	Y	K	A	K	R	K	.	.	D	G	K	D	D	K	D	Y	A	L	K	Q	I	E	G	T	G	I	S	M	.	.	.	.	S	A	C	R	E	I	A	L	L	R	E
Template Known Secondary structure											S	S												S	.	.	S	S	S											S	S	S	S				.	.	.	.
Template Predicted Secondary structure																									.	.																					.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure														.	.																				.
Query SS confidence														.	.																				.
Query Sequence		L	G	H	Q	N	I	I	K	F	Y	G	V	.	.	G	V	L	Q	E	P	L	Y	L	V	M	E	L	A	V	N	G	A	L	.	D	S	F	L	K	K	N	E	D	L	S	V	D	K	K	T	E	M	I	L	Q	A	A	W	G	L
Query Conservation														.	.																				.
Alig confidence														.	.																				.
Template Conservation
Template Sequence		L	K	H	P	N	V	I	S	L	Q	K	V	F	L	S	H	A	D	R	K	V	W	L	L	F	D	Y	A	E	H	D	L	W	H	I	I	K	F	H	R	A	S	K	L	P	R	G	M	V	K	S	L	L	Y	Q	I	L	D	G	I
Template Known Secondary structure					T	T	B										T	T	T	T										S
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.						.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.
Query SS confidence																										.	.	.	.	.
Query Sequence		E	Y	I	H	G	K	P	M	L	H	R	D	I	A	A	R	N	C	L	Y	T	D	G	K	.	.	.	.	.	V	K	I	S	D	F	G	L	T	R	N	G	T	V	Y	Q	I	K	P	N	T	K	S	P	I	R	W	L	A	I	E
Query Conservation																										.	.	.	.	.
Alig confidence																										.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	Y	L	H	A	N	W	V	L	H	R	D	L	K	P	A	N	I	L	V	M	G	E	G	P	E	R	G	R	V	K	I	A	D	M	G	F	A	R	V	T	F	W	.	.	.	.	.	.	.	.	.	.	.	Y	R	A	P	E	L
Template Known Secondary structure							T	T								G	G	G						S	S	T	T	T	T							T	T							T	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.												.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.								.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.														.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.														.	.	.	.	.
Query Sequence		T	I	K	T	M	I	C	S	E	K	T	D	V	W	A	Y	G	V	L	C	W	E	I	F	N	N	A	A	E	P	Y	P	G	M	K	.	.	.	.	.	.	.	P	A	D	V	A	T	Q	V	A	N	G	Y	R	.	.	.	.	.
Query Conservation																																					.	.	.	.	.	.	.														.	.	.	.	.
Alig confidence																											.										.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation																											.
Template Sequence		L	L	G	A	R	H	Y	T	K	A	I	D	I	W	A	I	G	C	I	F	A	E	L	L	T	.	S	E	P	I	F	H	C	R	Q	N	P	Y	H	H	D	Q	L	D	R	I	F	N	V	M	G	F	P	A	D	K	D	W	E	D
Template Known Secondary structure			T	T			S																				.	S	S		T	T																								T	T	T		G	G
Template Predicted Secondary structure																											.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
																														348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	P	Y	P	H	A	Q	A	E	I	Q	T	M	M	A	R	C	N	A	E	N	P	N	D	R	P	S	M	A	E	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	K	M	P	E	H	S	T	L	M	K	D	F	R	R	N	T	Y	T	N	C	S	L	I	K	Y	M	E	K	H	K	V	K	P	D	S	K	A	F	H	L	L	Q	K	L	L	T	M	D	P	I	K	R	I	T	S	E	Q	A
Template Known Secondary structure		G	G	G	S	T	T										G	G	G	G	T	T									T	T	T			T	T	S										S		S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Q
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		330	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D