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Job DescriptionQ22245
Confidence100.00%DateSun Jun 30 11:14:08 BST 2013
Rank137Aligned Residues252
% Identity17%Templatec1zrzA_
PDB info PDB header:transferaseChain: A: PDB Molecule:protein kinase c, iota; PDBTitle: crystal structure of the catalytic domain of atypical2 protein kinase c-iota
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   125....130.........140.........150.........160......... 170.........180...
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Query Sequence  LEHDQITIHKKLGEGAFGEVSSGVMKFKKGMKTVQVAIKQVKLDK. TGKAKIKDFLAEAR
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVR. . . . LKKTDRIYAMKVVKKELVNDDEDIDWVQTEKH
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   240.........250.........260... ......270.........280.........290.....
 
   184... ..190.........200.........210.........220.........230.........240..
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Query Sequence  TMRK. LGHQNIIKFYGVGVLQEPLYLVMELAVNGALDSFLKKNEDLSVDKKTEMILQAAW
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Template Sequence  VFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISL
Template Known Secondary structure  TTTTSSTTB


B
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   296...300.........310.........320.........330.........340.........350.....
 
   243......250.........260.. .......270.........280.........290.........300.
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Query Sequence  GLEYIHGKPMLHRDIAARNC. LYTDGKVKISDFGLTRNGTVYQIKPNTKSPIRWLAIETI
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Template Sequence  ALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSFCGTPNYIAPEIL
Template Known Secondary structure  TT
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GGG
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TT
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TT

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GGG

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   356...360.........370.........380.........390.........400.........410.....
 
   302.......310.........320.........330.........340.........350.........360.
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Query Sequence  KTMICSEKTDVWAYGVLCWEIFNNAAEPYPGMKPADVATQVANGYRMPPYPHAQAEIQTM
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Template Sequence  RGEDYGFSVDWWALGVLMFEMMA. GRSPFDQNTEDYLFQVILE. KQIRIPRSMSVKAASV
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   417..420.........430......... 440.........450........ .460.........470....
 
   362.......370..... ....380..
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Query Sequence  MARCNAENPNDRPS. . . . . . MAEIAEI
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Template Sequence  LKSFLNKDPKERLGCLPQTGFADIQGH
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SSSTTSTTTSTTTS
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   484.....490.........500.........510
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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