02/07/2013 06:55:18 : INFO  : Run start: Tue Jul  2 06:55:18 BST 2013
02/07/2013 06:55:18 : INFO  : Initialised job
02/07/2013 06:55:18 : INFO  : Initialised job:
Sequence
>batch____
MSQNSLPSEVSNATIDKELYYHGLLPSEDVRQLLSNNGDFLLRSSEPEPGSPRTHILSVM
FNNRLDDINSIKHFVVNFVDGKYFINDKMSFPSIQKMLGTYQRNNTEIKEGCMLVNPIRR
QFWELEHDQITIHKKLGEGAFGEVSSGVMKFKKGMKTVQVAIKQVKLDKTGKAKIKDFLA
EARTMRKLGHQNIIKFYGVGVLQEPLYLVMELAVNGALDSFLKKNEDLSVDKKTEMILQA
AWGLEYIHGKPMLHRDIAARNCLYTDGKVKISDFGLTRNGTVYQIKPNTKSPIRWLAIET
IKTMICSEKTDVWAYGVLCWEIFNNAAEPYPGMKPADVATQVANGYRMPPYPHAQAEIQT
MMARCNAENPNDRPSMAEIAEILQRVTETPRPNFTAIAKKEAEELLLMNSVTTKTTARRK
KSNVKLPKGMSKN

02/07/2013 06:55:18 : INFO  : Checked sequence
02/07/2013 06:55:18 : INFO  : Finding homologues with PSI-BLAST
02/07/2013 06:55:18 : INFO  : PSI-BLAST 3 iterations
02/07/2013 06:57:41 : INFO  : PSI-BLAST 5 iterations
02/07/2013 07:02:16 : INFO  : Finished PSI-BLAST
02/07/2013 07:02:16 : INFO  : Running Buildali to generate a3m file
02/07/2013 08:57:09 : INFO  : Converting to HMM
02/07/2013 08:57:34 : INFO  : Calibrating HMM
02/07/2013 08:57:43 : INFO  : Searching HMM database
02/07/2013 09:06:09 : INFO  : Finished buildali
02/07/2013 09:06:09 : INFO  : Predicting secondary structure
02/07/2013 09:06:10 : INFO  : Predicted secondary structure (PSI-Pred)
02/07/2013 09:06:10 : INFO  : Predicting Disordered regions
02/07/2013 09:06:10 : INFO  : Predicted Disorder (Disopred)
02/07/2013 09:06:10 : INFO  : Running memsat_svm check
02/07/2013 09:07:46 : INFO  : Running memsat_svm full
02/07/2013 09:10:08 : INFO  : Predicted Transmembrane (memsat_svm) ID 'a6521dc9f3af85a5'
02/07/2013 09:10:09 : INFO  : Initialising fold library search
02/07/2013 09:10:09 : INFO  : Initialised search input
02/07/2013 09:10:09 : INFO  : Building Ensemble models
02/07/2013 09:10:11 : INFO  : Building hh.c2fo0A_.model.1.pdb
02/07/2013 09:10:11 : INFO  : Building hh.c1oplA_.model.2.pdb
02/07/2013 09:10:12 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a6521dc9f3af85a5/hh.c1oplA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a6521dc9f3af85a5/c1oplA_.2.pdb
02/07/2013 09:10:12 : INFO  : Building hh.c1y57A_.model.3.pdb
02/07/2013 09:10:12 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a6521dc9f3af85a5/hh.c1y57A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a6521dc9f3af85a5/c1y57A_.3.pdb
02/07/2013 09:10:12 : INFO  : Building hh.c1k9aB_.model.4.pdb
02/07/2013 09:10:13 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a6521dc9f3af85a5/hh.c1k9aB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a6521dc9f3af85a5/c1k9aB_.4.pdb
02/07/2013 09:10:13 : INFO  : Building hh.c2h8hA_.model.5.pdb
02/07/2013 09:10:13 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a6521dc9f3af85a5/hh.c2h8hA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a6521dc9f3af85a5/c2h8hA_.5.pdb
02/07/2013 09:10:14 : INFO  : Building hh.c2c0iA_.model.6.pdb
02/07/2013 09:10:14 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a6521dc9f3af85a5/hh.c2c0iA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a6521dc9f3af85a5/c2c0iA_.6.pdb
02/07/2013 09:10:14 : INFO  : Building c2fo0A_.1.pdb
02/07/2013 09:10:14 : INFO  : Building c1oplA_.2.pdb
02/07/2013 09:10:15 : INFO  : Building c1y57A_.3.pdb
02/07/2013 09:10:16 : INFO  : Building c1k9aB_.4.pdb
02/07/2013 09:10:17 : INFO  : Building c2h8hA_.5.pdb
02/07/2013 09:10:17 : INFO  : Building c2c0iA_.6.pdb
02/07/2013 09:10:18 : INFO  : Building c4fl2A_.7.pdb
02/07/2013 09:10:18 : INFO  : Building c2ozoA_.8.pdb
02/07/2013 09:10:19 : INFO  : Building c3cblA_.9.pdb
02/07/2013 09:10:19 : INFO  : Building c2j0kB_.10.pdb
02/07/2013 09:10:20 : INFO  : Building c3zzwA_.11.pdb
02/07/2013 09:10:20 : INFO  : Building c2ivsA_.12.pdb
02/07/2013 09:10:20 : INFO  : Building d1qcfa3.13.pdb
02/07/2013 09:10:21 : INFO  : Building d1opja_.14.pdb
02/07/2013 09:10:21 : INFO  : Building c2pvfA_.15.pdb
02/07/2013 09:10:22 : INFO  : Building c1lufA_.16.pdb
02/07/2013 09:10:22 : INFO  : Building d1lufa_.17.pdb
02/07/2013 09:10:22 : INFO  : Building c4im2A_.18.pdb
02/07/2013 09:10:23 : INFO  : Building d1u59a_.19.pdb
02/07/2013 09:10:23 : INFO  : Building c3qa8H_.20.pdb
02/07/2013 09:10:39 : INFO  : Finished HH model building
02/07/2013 09:10:39 : WARN  : Set python to /bmm/www/servers/phyre2/bin//python2.7/2.7.2/bin/python2.7
02/07/2013 09:10:48 : INFO  : html domain output complete ID 'a6521dc9f3af85a5'
02/07/2013 12:16:43 : INFO  : Run end  : Tue Jul  2 12:16:43 BST 2013
