Job Description Q9U2T9 Confidence 98.64% Date Fri May 3 21:47:53 BST 2013 Rank 230 Aligned Residues 141 % Identity 18% Template c2hpkA_ PDB info PDB header:luminescent protein Chain: A: PDB Molecule:photoprotein berovin; PDBTitle: crystal structure of photoprotein berovin from beroe2 abyssicola Resolution 2.00 Å

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		14	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40												.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure													.																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	F	A	M	F	G	Q	L	T	G	.	G	Q	P	F	M	D	A	V	T	A	R	N	A	L	M	R	.	.	.	.	.	.	.	.	.	.	.	S	N	L	P	T	Q	V	L	S	Q	I	W	A	L	S	D	L	D	K	D	G	R	L	D	I	R	E	Y	S	I	A	M	R	L	A	L	N	C	L	A	G
Query Conservation													.																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Conservation																																																																																	.
Template Sequence		R	L	Y	K	R	F	D	T	F	D	L	D	S	D	G	K	X	E	X	D	E	V	L	Y	W	P	D	R	X	R	Q	L	V	N	A	T	D	E	Q	V	E	K	X	R	D	A	V	R	V	F	F	L	H	K	G	V	E	P	V	N	G	L	L	R	E	D	W	V	E	A	N	R	V	F	A	E	A	E	R	.
Template Known Secondary structure												T	T		S	S								T										S																					T	T		B	T	T	T	B			G	G	G														.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	I	P	P	Q	L	P	P	S	L	L	V	V	P	A	R	N	A	P	P	T	W	P	G	S	R	H	G	S	V	D	Y	S	Q	T	L	P	P	A	I	D	R	R	M	S	Q	S	Y	I	P	S	A	P	V	S	I	A	G	T	P	S	S	R	H	N	S	I	S	A	G	S	P	L	N	N	D	R	N	V
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	G	R	Q	L	E	N	W	A	I	P	H	H	N	K	L	K	Y	S	Q	L	F	N	A	L	D	K	E	R	L	G	S	L	S	S	Q	V	G	R	S	A	L	G	L	S	G	L	P	T	N	V	L	A	H	I	W	F	L	S	D	V	N	K	D	G	K	L	S	V	D	E	Y	A	I	S	Q	Y
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	E	R	E	R	R	G	E	P	S	L	I	A	L	L	S	N	S	Y	Y	D	V	L	D	D	D	G	D	G	T	V	D	V	D	E	L	K	T	X	X	K	A	F	D	V	P	Q	E	A	A	Y	T	F	F	E	K	A	D	T	D	K	S	G	K	L	E	R	T	E	L	V	H	L	F	R
Template Known Secondary structure		.	.	.	.					T	T																		T	T		S	S	S	B												T	T	S		T	T											T	T			S	S	B
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D