Phyre 2 alignment of Q9U2T9 with c1wxuA_

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Job Description | Q9U2T9
Confidence | 99.37% | Date | Fri May 3 21:47:53 BST 2013
Rank | 207 | Aligned Residues | 59
% Identity | 31% | Template | c1wxuA_
PDB info | PDB header:protein transport | Chain: A: PDB Molecule:peroxisomal biogenesis factor 13; | PDBTitle: solution structure of the sh3 domain of mouse peroxisomal2 biogenesis factor 13
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 1023 | . | . | . | . | . | . | 1030 | . | . | . | . | . | . | . | . | . | 1040 | . | . | . | . | . | . | . | . | . | 1050 | . | . | . | . | . | . | . | . | . | 1060 | . |  |  |  |  | . | . | . | . | . | . | . | . | 1070 | . | . | . | . | . | . | . | . | . | 1080 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | A | S | P | A | T | R | A | T | A | V | Y | D | Y | E | A | S | Q | P | D | E | L | G | F | K | T | G | D | V | I | I | V | T | D | K | S | E | A | E | . | . | . | . | W | W | S | G | H | R | E | Q | D | P | S | K | S | G | L | F | P | S | N | Y | V | Q
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | E | D | D | H | V | V | A | R | A | E | Y | D | F | V | A | V | S | D | E | E | I | S | F | R | A | G | D | M | L | N | L | A | L | K | E | Q | Q | P | K | V | R | G | W | L | L | A | S | . | . | L | D | G | Q | T | T | G | L | I | P | A | N | Y | V | K
Template Known Secondary structure |  | T | S | S |  | B | B |  |  |  |  | S | S |  | B |  |  | S | S | S | S | B |  |  | B |  | S | S |  | B |  |  |  |  |  | T | T | T | S |  | S |  | S | S |  |  |  |  |  | . | . | S | S | S | S | S |  |  |  |  |  | S | T | T |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |  |  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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| Phyre2 is part of Genome3D |