07/05/2013 13:50:54 : INFO  : Run start: Tue May  7 13:50:54 BST 2013
07/05/2013 13:50:54 : INFO  : Initialised job
07/05/2013 13:50:54 : INFO  : Initialised job:
Sequence
>batch____
MTNPWEVSDAEYQKNFAMFGQLTGGQPFMDAVTARNALMRSNLPTQVLSQIWALSDLDKD
GRLDIREYSIAMRLALNCLAGIPIPPQLPPSLLVVPARNAPPTWPGSRHGSVDYSQTLPP
AIDRRMSQSYIPSAPVSIAGTPSSRHNSISAGSPLNNDRNVFEGRQLENWAIPHHNKLKY
SQLFNALDKERLGSLSSQVGRSALGLSGLPTNVLAHIWFLSDVNKDGKLSVDEYAISQYM
IEMFKSGFALPKITPLELVRMCGISSRSANNTPELEPGAEPPQKSPAPKTFEDKRQDNLS
KGQAELERRRRVLEEEEQRRRAEVEKKEREEEAKKNRERQEKERQAEVERQAELERQRII
EAQREEEEKKRRLEMERRREEDEKMRKVQMEKAKVKQMQNQKQQENERLAQRQQREKTLQ
FQLQALDEKVIDVEVDIGKAKEAVAEVTGFIERMRSTRDEKVARIKELQETNQKTAIESQ
ELGHQLLQKQSAHKETTQRKSELEALRRKRDAIRKAIEDAALELSTEKEKSYNQTEILKT
NKEKYKTDVYSKLVAKREEYRNSFELLVHAQTHARSKIGEFEAKSAPASAAPAPAPAPAP
TTTNGFPANFNDAFGEFDKTDASQRFDADFGATSTADPFAQIAQAPAHSKGAVDQSAFNI
HDTYKCRALFAFEARSEDELSFEPGDVIIVFQSHAAEPGWRAGQLREKVGWFPEAFVEAI
AAVPTPGGDPPIQNMPPNMTPSSSVDQIGVKAARKAEIAAAMGLTEGGAPPASSAPAAAA
VISQCIAQFQWRARNEEDLSFAKGDTIEVLEKQEMKWKGRNPAGEIGWFPKSYVKEVGAT
TSTTTPIVSPSKASAGAPGAAAGAQYDVVPSDVTLQASETAPQQQLYTVIYDFEAVETTD
LALHVGDTILVLEKNDEWWKGRCNGREGIFPANYVEISVQQAGDPTPPTQAPTPAAPPTV
LCEAKVVVDFVASAPNQLGIKVGEIVKIREKSAAGWWEGELIRNGKPIAGWFPGEYVKVL
EEAASPATRATAVYDYEASQPDELGFKTGDVIIVTDKSEAEWWSGHREQDPSKSGLFPSN
YVQQQ

07/05/2013 13:50:54 : INFO  : Checked sequence
07/05/2013 13:50:55 : INFO  : Finding homologues with PSI-BLAST
07/05/2013 13:50:55 : INFO  : PSI-BLAST 3 iterations
07/05/2013 13:57:11 : INFO  : PSI-BLAST 5 iterations
07/05/2013 14:02:34 : INFO  : Finished PSI-BLAST
07/05/2013 14:02:35 : INFO  : Running Buildali to generate a3m file
07/05/2013 18:38:04 : INFO  : Converting to HMM
07/05/2013 18:42:49 : INFO  : Calibrating HMM
07/05/2013 18:43:16 : INFO  : Searching HMM database
07/05/2013 19:04:12 : INFO  : Finished buildali
07/05/2013 19:04:12 : INFO  : Predicting secondary structure
07/05/2013 19:04:13 : INFO  : Predicted secondary structure (PSI-Pred)
07/05/2013 19:04:13 : INFO  : Predicting Disordered regions
07/05/2013 19:04:13 : INFO  : Predicted Disorder (Disopred)
07/05/2013 19:04:13 : INFO  : Running memsat_svm check
07/05/2013 19:19:09 : INFO  : Globular protein
07/05/2013 19:19:09 : INFO  : Predicted Transmembrane (memsat_svm) ID 'a42f66bda372091e'
07/05/2013 19:19:09 : INFO  : Initialising fold library search
07/05/2013 19:19:10 : INFO  : Initialised search input
07/05/2013 19:19:10 : INFO  : Building Ensemble models
07/05/2013 19:19:10 : INFO  : Building hh.c2khnA_.model.1.pdb
07/05/2013 19:19:10 : INFO  : Building hh.c1griA_.model.2.pdb
07/05/2013 19:19:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/hh.c1griA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/c1griA_.2.pdb
07/05/2013 19:19:11 : INFO  : Building hh.c2jq6A_.model.3.pdb
07/05/2013 19:19:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/hh.c2jq6A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/c2jq6A_.3.pdb
07/05/2013 19:19:11 : INFO  : Building hh.c3fiaA_.model.4.pdb
07/05/2013 19:19:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/hh.c3fiaA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/c3fiaA_.4.pdb
07/05/2013 19:19:12 : INFO  : Building hh.c2lqnA_.model.5.pdb
07/05/2013 19:19:12 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/hh.c2lqnA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/c2lqnA_.5.pdb
07/05/2013 19:19:12 : INFO  : Building hh.c2kfhA_.model.6.pdb
07/05/2013 19:19:13 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/hh.c2kfhA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/c2kfhA_.6.pdb
07/05/2013 19:19:13 : INFO  : Building hh.d2jxca1.model.7.pdb
07/05/2013 19:19:13 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/hh.d2jxca1.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/d2jxca1.7.pdb
07/05/2013 19:19:13 : INFO  : Building hh.c2eyzA_.model.8.pdb
07/05/2013 19:19:14 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/hh.c2eyzA_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/c2eyzA_.8.pdb
07/05/2013 19:19:14 : INFO  : Building hh.c2l3sA_.model.9.pdb
07/05/2013 19:19:14 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/hh.c2l3sA_.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/c2l3sA_.9.pdb
07/05/2013 19:19:14 : INFO  : Building hh.c2qptA_.model.10.pdb
07/05/2013 19:19:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/hh.c2qptA_.model.10.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/c2qptA_.10.pdb
07/05/2013 19:19:15 : INFO  : Building hh.c1ov3A_.model.11.pdb
07/05/2013 19:19:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/hh.c1ov3A_.model.11.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a42f66bda372091e/c1ov3A_.11.pdb
07/05/2013 19:19:16 : INFO  : Building c2khnA_.1.pdb
07/05/2013 19:19:16 : INFO  : Building c1griA_.2.pdb
07/05/2013 19:19:16 : INFO  : Building c2jq6A_.3.pdb
07/05/2013 19:19:17 : INFO  : Building c3fiaA_.4.pdb
07/05/2013 19:19:17 : INFO  : Building c2lqnA_.5.pdb
07/05/2013 19:19:18 : INFO  : Building c2kfhA_.6.pdb
07/05/2013 19:19:18 : INFO  : Building d2jxca1.7.pdb
07/05/2013 19:19:19 : INFO  : Building c2eyzA_.8.pdb
07/05/2013 19:19:20 : INFO  : Building c2l3sA_.9.pdb
07/05/2013 19:19:21 : INFO  : Building c2qptA_.10.pdb
07/05/2013 19:19:21 : INFO  : Building c1ov3A_.11.pdb
07/05/2013 19:19:22 : INFO  : Building d1iq3a_.12.pdb
07/05/2013 19:19:23 : INFO  : Building c1ng2A_.13.pdb
07/05/2013 19:19:23 : INFO  : Building c2kgrA_.14.pdb
07/05/2013 19:19:24 : INFO  : Building d1fi6a_.15.pdb
07/05/2013 19:19:24 : INFO  : Building d1c07a_.16.pdb
07/05/2013 19:19:24 : INFO  : Building c1mv3A_.17.pdb
07/05/2013 19:19:25 : INFO  : Building d1qjta_.18.pdb
07/05/2013 19:19:26 : INFO  : Building c2dx1A_.19.pdb
07/05/2013 19:19:27 : INFO  : Building d1udla_.20.pdb
07/05/2013 19:19:39 : INFO  : Finished HH model building
07/05/2013 19:19:39 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
07/05/2013 19:19:46 : INFO  : html domain output complete ID 'a42f66bda372091e'
07/05/2013 19:38:03 : INFO  : Run end  : Tue May  7 19:38:03 BST 2013
