Job Description O01798 Confidence 98.18% Date Fri May 3 21:22:31 BST 2013 Rank 429 Aligned Residues 176 % Identity 14% Template c3tdvB_ PDB info PDB header:transferase Chain: B: PDB Molecule:gentamicin resistance protein; PDBTitle: structure of the gdp complex of wild-type aminoglycoside 2'-2 phosphotransferase-iiia Resolution 2.20 Å

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		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.
Predicted Secondary structure																																																												.	.	.														.
Query SS confidence																																																												.	.	.														.
Query Sequence		K	K	L	G	E	G	Q	F	G	E	V	H	K	G	S	L	K	T	S	V	F	A	A	P	V	T	V	A	V	K	T	L	H	Q	N	H	L	S	A	N	E	K	I	L	F	L	R	E	A	N	V	M	L	T	L	S	H	P	.	.	.	N	V	I	K	F	Y	G	V	C	T	M	K	E	.	P	I	M	I	V
Query Conservation																																																												.	.	.														.
Alig confidence																.	.	.			.	.	.	.	.	.											.	.	.	.																				.	.	.														.
Template Conservation																.	.	.			.	.	.	.	.	.											.	.	.	.
Template Sequence		E	S	L	G	E	G	F	R	N	Y	A	I	L	V	.	.	.	N	G	.	.	.	.	.	.	D	W	V	F	R	F	P	K	S	Q	.	.	.	.	Q	G	A	D	E	L	N	K	E	I	Q	L	L	P	L	L	V	G	C	V	K	V	N	I	P	Q	Y	V	Y	I	G	K	R	S	D	G	N	P	F	V	G
Template Known Secondary structure								S	S							.	.	.	T	T	.	.	.	.	.	.	T							S	S		.	.	.	.																	G	G	G		S	S	B											T	T	S
Template Predicted Secondary structure																.	.	.			.	.	.	.	.	.											.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.				.	40							.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	E	F	C	D	G	K	S	L	E	D	A	L	L	S	K	E	E	K	V	S	A	E	D	K	I	L	Y	L	F	H	A	A	C	G	I	D	Y	L	H	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.
Template Sequence		Y	R	K	V	Q	G	Q	I	L	G	E	D	G	M	A	.	.	.	V	F	P	D	D	A	K	D	R	L	A	L	Q	L	A	E	F	M	N	E	L	S	A	F	P	V	E	T	A	I	S	A	G	V	P	V	T	N	L	K	N	K	I	L	L	L	S	E	A	V	E	D	Q	V	F	P	L	L	D	E	S	L
Template Known Secondary structure							S										.	.	.	T																							S								T	T			B																		T	G	G	G	S
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
																								339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.					.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	I	H	R	D	I	A	A	R	N	C	L	L	N	S	K	K	.	.	.	.	I	L	K	I	S	D	F	G	L	S	V	K	G	V	A	I	K	E	R	K	G	G	C	L	P	V	K	Y	M	A	P	E	T	L	K	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation
Template Sequence		R	D	Y	L	T	L	R	F	Q	S	Y	M	T	H	P	V	Y	T	R	Y	T	P	R	L	I	H	G	D	L	S	P	D	H	F	L	T	N	L	N	S	R	Q	T	P	L	T	G	I	I	D	F	G	D	A	A	I	S	D	P	D	Y	D	Y	V	Y	L	L	E	D	C	G	E	L	F	T	R	Q	V	M	A
Template Known Secondary structure																												S				G	G	G					T	T		S	S		S								T	T						G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	Y	S	T	A	S	D	I	Y	S	Y	G	A	L	M	Y	E	V	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	G	E	V	D	L	D	T	H	I	R	K	V	S	L	F	V	T	F
Template Known Secondary structure			T	T		S
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D