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Job DescriptionO01798
Confidence100.00%DateFri May 3 21:22:31 BST 2013
Rank226Aligned Residues209
% Identity27%Templatec2hakH_
PDB info PDB header:signaling protein,transferaseChain: H: PDB Molecule:serine/threonine-protein kinase mark1; PDBTitle: catalytic and ubiqutin-associated domains of mark1/par-1
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   215....220.........230.........240.........250.........260.........270.........280.........290....
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Query Sequence  EQVTLNKKLGEGQFGEVHKGSLKTSVFAAPVTVAVKTLHQNHLSANEKILFLREANVMLTLSHPNVIKFYGVCTMKEPIM
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Template Sequence  GNYRLQKTIGKGNFAKVKLARHVLT. . . . GREVAVKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLY
Template Known Secondary structure  TT
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   51........60.........70..... ....80.........90.........100.........110.........120......
 
   295....300.........310.........320.........330.........340.........350.........360.........370....
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Query Sequence  IVMEFCDGKSLEDALLSKEEKVSAEDKILYLFHAACGIDYLHGKQVIHRDIAARNCLLNSKKILKISDFGLSVKGVAIKE
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Template Sequence  LVMEYASGGEVFDYLVAHGR. MKEKEARAKFRQIVSAVQYCHQKYIVHRDLKAENLLLDGDMNIKIADFGFSNEF. . . . .
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TT
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   127..130.........140...... ...150.........160.........170.........180.........190.........200
 
   375....380.........390.........400.........410.........420.........430.........440.........450....
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Query Sequence  RKGGCLPVKYMAPETLKKGLYSTASDIYSYGALMYEVYTDGKTPFETCGLRGNELRKAIIGKRISLAVEVELPVFIANIF
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Template Sequence  . . . . . . . . . . . . . . . . . . . TVGPEVDVWSLGVILYTLVS. GSLPFDR. . . . . . . . . . . . . . . . . . . . IPFYMSTDCENLL
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   201........210.........220 ....... ..230.........240
 
   455....460.........470...
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Query Sequence  EQSRQYETEDRISSKQIIQ
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Template Sequence  KKLLVLNPIKRGSLEQIMK
Template Known Secondary structure  T
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   282.......290.........300
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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