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Job DescriptionO01798
Confidence100.00%DateFri May 3 21:22:31 BST 2013
Rank62Aligned Residues239
% Identity27%Templatec2bmcD_
PDB info PDB header:transferaseChain: D: PDB Molecule:serine threonine-protein kinase 6; PDBTitle: aurora-2 t287d t288d complexed with pha-680632
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   210.........220.........230.........240.........250.........260. ........270.........280........
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Query Sequence  WQLNNEQVTLNKKLGEGQFGEVHKGSLKTSVFAAPVTVAVKTLHQNHLSANE. KILFLREANVMLTLSHPNVIKFYGVCT
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Template Sequence  WAL. . EDFEIGRPLGKGKFGNVYLAREKQS. . . . KFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH
Template Known Secondary structure 

G..GG
SSTTT....

TT
TT


TTB

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   128.130 .........140.........150..... ....160.........170.........180.........190.........200.
 
   289290.........300.........310.........320.........330.........340.........350.........360........
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Query Sequence  MKEPIMIVMEFCDGKSLEDALLSKEEKVSAEDKILYLFHAACGIDYLHGKQVIHRDIAARNCLLNSKKILKISDFGLSVK
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Template Sequence  DATRVYLILEYAPLGTVYRELQKLSK. FDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS. .
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SS


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   202.......210.........220....... ..230.........240.........250.........260.........270........
 
   369370.........380.........390.........400.........410.........420.........430.........440........
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Query Sequence  GVAIKERKGGCLPVKYMAPETLKKGLYSTASDIYSYGALMYEVYTDGKTPFETCGLRGNELRKAIIGKRISLAVEVELPV
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Template Sequence  . . . . . . . . . . . VTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV. GKPPF. . EANTYQETYKRISRVEF. . TFPDFVTE
Template Known Secondary structure  ...........

GGG

GGGTTTTSSGGG.SS
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   279280.........290.........300.........310.. ..... ..320.........330.... .....340..
 
   449450.........460.........470...
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Query Sequence  FIANIFEQSRQYETEDRISSKQIIQ
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Template Sequence  GARDLISRLLKHNPSQRPMLREVLE
Template Known Secondary structure  S
SSGGGS

T
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   355....360.........370.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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