Phyre 2 alignment of O01798 with c1k9aB

Job Description O01798
Confidence 100.00% Date Fri May 3 21:22:31 BST 2013

Rank 5 Aligned Residues 358

% Identity 27% Template c1k9aB_

PDB info PDB header:transferase Chain: B: PDB Molecule:carboxyl-terminal src kinase; PDBTitle: crystal structure analysis of full-length carboxyl-terminal2 src kinase at 2.5 a resolution

Resolution 2.50 Å

Model Dimensions (Å) X:57.186 Y:71.057 Z:55.135

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	97	.	.	100	.	.	.						.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.																												.	.
Query SS confidence								.	.	.	.	.																												.	.
Query Sequence	V	P	S	D	E	V	G	.	.	.	.	.	R	V	E	N	N	I	D	N	F	P	F	Y	H	G	F	M	G	R	N	E	C	E	A	M	L	S	N	.	.	H	G	D	F	L	I	R	M	T	E	I	G	K	R	V	A	Y	V	I	S	I	K	W	K	Y	Q	N	I	H	V	L	V	K	R	T	K	T	K	K
Query Conservation								.	.	.	.	.																												.	.
Alig confidence								.	.	.	.	.																												.	.											.																								.
Template Conservation																																																				.																								.
Template Sequence	I	P	A	N	Y	V	Q	K	R	E	G	V	K	A	G	T	K	L	S	L	M	P	W	F	H	G	K	I	T	R	E	Q	A	E	R	L	L	Y	P	P	E	T	G	L	F	L	V	R	E	S	T	.	N	Y	P	G	D	Y	T	L	C	V	S	C	E	G	K	V	E	H	Y	R	I	M	Y	.	H	A	S	K
Template Known Secondary structure			G	G	G										S	S	S			S		T	T	B			S										T		S			T	T								S	.	S	S	T	T									T	T										.		T	T
Template Predicted Secondary structure																																																				.																								.
Template SS confidence
	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.

	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.											.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.
Query Sequence	L	Y	W	T	K	K	Y	A	F	K	S	I	C	E	L	I	A	Y	H	K	R	N	H	K	P	I	Y	E	G	M	T	L	I	C	G	L	A	.	.	.	.	.	.	.	.	.	.	R	H	G	W	Q	L	N	N	E	Q	V	T	L	N	K	K	L	G	E	G	Q	F	G	E	V	H	K	G	S	L	K	T	S
Query Conservation																																						.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	S	I	D	E	E	V	Y	F	E	N	L	M	Q	L	V	E	H	Y	T	T	D	A	D	G	L	C	T	R	L	I	K	P	K	V	M	E	G	T	V	A	A	Q	D	E	F	Y	R	S	G	W	A	L	N	M	K	E	L	K	L	L	Q	T	I	G	K	G	E	F	G	D	V	M	L	G	D	Y	R	G	N
Template Known Secondary structure			S	S	S	S	S		B	S	S													T	T	S	S	S				S	B				S	S											T	T		B			G	G	G											T	T									T	T
Template Predicted Secondary structure
Template SS confidence
	138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.
Predicted Secondary structure																																																					.																					.
Query SS confidence																																																					.																					.
Query Sequence	V	F	A	A	P	V	T	V	A	V	K	T	L	H	Q	N	H	L	S	A	N	E	K	I	L	F	L	R	E	A	N	V	M	L	T	L	S	H	P	N	V	I	K	F	Y	G	V	C	T	M	K	E	.	P	I	M	I	V	M	E	F	C	D	G	K	S	L	E	D	A	L	L	S	.	K	E	E	K	V	S
Query Conservation																																																					.																					.
Alig confidence	.	.	.	.	.	.																.	.	.	.																												.																					.
Template Conservation	.	.	.	.	.	.																.	.	.	.
Template Sequence	.	.	.	.	.	.	K	V	A	V	K	C	I	K	N	D	A	T	A	Q	A	.	.	.	.	F	L	A	E	A	S	V	M	T	Q	L	R	H	S	N	L	V	Q	L	L	G	V	I	V	E	E	K	G	G	L	Y	I	V	T	E	Y	M	A	K	G	S	L	V	D	Y	L	R	S	R	G	R	S	V	L	G
Template Known Secondary structure	.	.	.	.	.	.								S	S		T	T	S			.	.	.	.									T	T				T	T	B										S	S	S										T	T		B										T	T	T
Template Predicted Secondary structure	.	.	.	.	.	.																.	.	.	.
Template SS confidence
							218	.	220	.	.	.	.	.	.	.	.	.	230	.	.					.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

	318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	E	D	K	I	L	Y	L	F	H	A	A	C	G	I	D	Y	L	H	G	K	Q	V	I	H	R	D	I	A	A	R	N	C	L	L	N	S	K	K	I	L	K	I	S	D	F	G	L	S	V	K	G	V	A	I	K	E	R	K	G	G	C	L	P	V	K	Y	M	A	P	E	T	L	K	K	G	L	Y	S	T
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.
Template Sequence	G	D	C	L	L	K	F	S	L	D	V	C	E	A	M	E	Y	L	E	G	N	N	F	V	H	R	D	L	A	A	R	N	V	L	V	S	E	D	N	V	A	K	V	S	D	F	G	L	T	.	.	.	.	.	.	.	.	K	E	A	G	K	L	P	V	K	W	T	A	P	E	A	L	R	E	K	K	F	S	T
Template Known Secondary structure																					T	T		B		S				G	G	G					T	T									T	T		.	.	.	.	.	.	.	.	B							T	T	T	S						T	T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.
Template SS confidence
	288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.									.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

	398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	S	D	I	Y	S	Y	G	A	L	M	Y	E	V	Y	T	D	G	K	T	P	F	E	T	C	G	L	R	G	N	E	L	R	K	A	I	I	G	K	R	I	S	L	A	V	E	V	E	L	P	V	F	I	A	N	I	F	E	Q	S	R	Q	Y	E	T	E	D	R	I	S	S	K	Q	I	I	Q	I	F	K	E
Query Conservation
Alig confidence																							.	.														.
Template Conservation																							.	.														.
Template Sequence	K	S	D	V	W	S	F	G	I	L	L	W	E	I	Y	S	F	G	R	V	P	Y	.	.	P	R	I	P	L	K	D	V	V	P	R	V	E	.	K	G	Y	K	M	D	A	P	D	G	C	P	P	A	V	Y	D	V	M	K	N	C	W	H	L	D	A	A	T	R	P	T	F	L	Q	L	R	E	Q	L	E	H
Template Known Secondary structure																T	T	T			S	S	.	.	T	T	S		T	T	T						T	.	T	T							T	T													T		S	S	G	G	G	S
Template Predicted Secondary structure																							.	.														.
Template SS confidence
	366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.			.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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