Job Description G5EC24 Confidence 100.00% Date Fri May 3 21:06:01 BST 2013 Rank 6 Aligned Residues 355 % Identity 32% Template c3sr9A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:receptor-type tyrosine-protein phosphatase s; PDBTitle: crystal structure of mouse ptpsigma Resolution 2.40 Å Model Dimensions (Å) X:77.135 Y:61.011 Z:66.692

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		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	A	D	L	F	V	D	R	F	E	I	I	R	R	P	I	N	P	R	E	S	M	E	K	T	G	I	S	E	E	F	D	R	L	S	Q	E	A	L	P	A	E	Q	Y	L	S	K	R	E	G	R	R	P	V	N	A	E	K	N	R	Y	K	N	I	V	P	F	D	H	T	R	V	I	L	T	D	R	P	N
Query Conservation
Alig confidence																		.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.													.	.	.	.	.
Template Sequence		I	P	I	T	D	M	A	E	H	M	E	R	L	K	A	N	.	.	.	.	.	.	.	D	S	L	K	L	S	Q	E	Y	E	S	I	.	.	.	.	.	D	P	G	Q	Q	F	T	W	E	H	S	N	L	E	A	N	K	P	K	N	R	Y	A	N	V	I	A	Y	D	H	S	R	V	I	L	Q	P	L	E	G
Template Known Secondary structure				T	T	S												.	.	.	.	.	.	.													.	.	.	.	.													S	T	T	T	G	G	G		S	S	T	T					G	G	G								T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.													.	.	.	.	.
Template SS confidence
		1332	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.								.	.	1350	.	.	.	.	.	.	.	.	.						1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		T	P	G	S	D	Y	I	N	A	S	Y	V	R	F	E	N	S	Q	R	T	K	N	V	T	F	A	C	E	K	S	F	I	A	T	Q	G	C	L	E	T	T	I	S	D	F	W	S	M	V	W	Q	E	N	S	R	V	I	V	M	P	T	M	E	N	E	.	R	K	E	K	C	A	R	Y	W	P	A	E	V	N
Query Conservation																																																																			.
Alig confidence															.	.	.	.	.	.	.	.	.	.																																											.													.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.																																																								.	.
Template Sequence		I	M	G	S	D	Y	I	N	A	N	Y	V	D	.	.	.	.	.	.	.	.	.	.	G	Y	R	R	Q	N	A	Y	I	A	T	Q	G	P	L	P	E	T	F	G	D	F	W	R	M	V	W	E	Q	R	S	A	T	V	V	M	M	T	R	L	E	E	K	S	R	I	K	C	D	Q	Y	W	P	N	R	.	.
Template Known Secondary structure			T	T	T	T									.	.	.	.	.	.	.	.	.	.		T	T													G	G	G											T	T								S		S			T	T			S					S		S	S	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																																																								.	.
Template SS confidence
		1400	.	.	.	.	.	.	.	.	.	1410	.	.											.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.			460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		K	P	E	V	H	G	D	I	S	L	T	C	T	I	E	R	K	V	Q	R	A	V	S	D	E	V	K	A	E	L	E	Q	E	K	T	N	R	I	A	K	G	L	V	P	E	A	E	L	N	G	D	G	I	S	Y	I	L	R	T	L	V	M	K	K	.	.	G	K	D	T	R	E	I	R	Q	L	Q	Y	L	T
Query Conservation																																																																		.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	E	T	Y	G	F	I	Q	V	T	L	L	D	T	M	E	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	C	V	R	T	F	S	L	H	K	N	G	S	S	E	K	R	E	V	R	H	F	Q	F	T	A
Template Known Secondary structure		S					T	T												S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S											S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1468	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.																																			.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	D	H	G	C	P	L	H	P	Y	A	V	L	N	F	L	E	D	V	D	R	E	Y	D	Y	F	N	A	Q	P	I	A	A	S	L	P	Q	G	P	I	V	V	H	C	S	A	G	I	G	R	T	G	T	V	L	V	L	D	A	L	L	N	Q	V	K	K	V	G	L	L	C	P	M	D	V	Y	K	M	V
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.																																						.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.																																						.	.	.
Template Sequence		W	P	D	H	G	V	P	E	Y	P	T	P	F	L	A	F	L	R	R	V	K	T	.	.	.	.	.	.	.	.	.	.	C	N	P	P	D	A	G	P	I	V	V	H	C	S	A	G	V	G	R	T	G	C	F	I	V	I	D	A	M	L	E	R	I	K	T	E	K	.	.	.	T	V	D	V	Y	G	H	V
Template Known Secondary structure				S	S	S			S		S													.	.	.	.	.	.	.	.	.	.	S	S		T	T	S							S	S	S	S	S	S																T	T	S	S	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.																																						.	.	.
Template SS confidence
		1514	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.											.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.				.	.	.	.	.	.	.	1580
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	V	R	T	Y	R	S	G	L	V	Q	T	E	Q	Q	Y	Q	F	L	Y	K	A	L	A	F	Y	L	K	N	N	N	P	Y	P	V	K	S	F	I	D	G	D	T	D	A	F	D	F	P	R	R	L	R	P	T	P	N	A	S	R	P	S	S	A	R	Q	V	T	S	S	R	P	S	S	S	A	S	S	R
Query Conservation
Alig confidence																																																																								.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		T	L	M	R	S	Q	R	N	Y	M	V	Q	T	E	D	Q	Y	G	F	I	H	E	A	L	L	E	A	V	G	C	G	N	T	E	V	P	A	R	S	L	Y	T	Y	I	Q	K	L	A	Q	V	E	P	G	E	H	V	T	G	M	E	L	E	F	K	R	L	A	F	I	T	.	.	.	A	S	L	P	C	N	K
Template Known Secondary structure						T	T	S	T	T	S	S		S																	S							G	G	G									T	S			T	T		S	S									T	T			T	T	.	.	.	T	S		T	T		T
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		1581	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650				.	.	.	.	.	.	.
		634	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	H	S	R	P	R	T	G	P	Q	A	E	P	I	F	E	R	S	T	S	S	T	S	S	S	S	T	L	L	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	N	R	L	V	N	I	L	P	Y	E	S	S	R	V	C	L	Q	P	I	R	G	V	E	G	S	D	Y	I	N	A
Template Known Secondary structure		T	T		S		S	S	S				T	T	T	B							T	T		T	T		S			S
Template Predicted Secondary structure
Template SS confidence
		1666	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.