Job Description G5EC24 Confidence 99.96% Date Fri May 3 21:06:01 BST 2013 Rank 53 Aligned Residues 168 % Identity 17% Template c2xp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6 Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	L	A	L	R	Q	Y	N	F	Y	Y	R	V	N	G	E	K	A	E	E	L	L	K	E	Y	G	E	D	G	D	F	L	L	R	Y	S	E	S	N	P	Q	N	F	S	I	S	V	R	V	A	E	D	K	I	L	H	I	K	V	T	K	Y	E	S	D	M	L	S	I	F	E	D	E	R	T	T	P	N	Q
Query Conservation
Alig confidence								.					.														.	.											.																															.	.	.	.	.	.	.
Template Conservation								.					.														.	.											.																															.	.	.	.	.	.	.
Template Sequence		P	R	F	Y	K	H	.	P	L	F	K	.	N	F	N	V	T	E	S	E	N	Y	L	R	S	.	.	S	T	D	D	F	L	I	R	K	G	.	S	R	H	G	Y	C	V	L	V	I	K	F	A	S	D	V	F	V	H	M	K	I	E	E	H	S	E	H	Y	T	.	.	.	.	.	.	.	C	S	N	K	H
Template Known Secondary structure			G	G	G	G	S	.	T	T			.														.	.	S	S									.	S	S	T	T										T	T											S	S				.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure								.					.														.	.											.																															.	.	.	.	.	.	.
Template SS confidence
		787	.	.	790	.	.		.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.			810	.	.	.	.	.	.	.	.	.		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.								850	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	S	I	T	E	L	A	E	F	Y	M	E	F	P	E	K	L	R	E	K	N	G	L	F	L	E	L	K	K	P	V	Y	V	P	Y	H	L	E	A	C	A	E	E	Q	R	R	T	Q	L	Y	R	W	W	H	G	N	L	P	A	S	S	A	N	K	L	L	Q	T	E	K	N	G	T	Y	L	L	R	A	S
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	D	I	D	E	V	I	S	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	P	I	L	R	N	L	K	S	I	K	A	H	A	K	Y	F	N	S	P	E	D	A	E	K	L	L	S	S	F	D	G	S	K	V	V	Y	A	F	Y	F	S
Template Known Secondary structure			S	S								T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														S	T	T	B		S		T	T	T	S						T			S	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		855	.	.	.	.	860	.	.	.	.	.																											.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	I	P	G	A	L	V	I	S	A	K	T	E	G	Q	V	V	H	L	T	I	Y	Q	D	P	S	T	G	R	F	N	I	D	G	D	R	T	K	F	Q	S	A	W	L	L	I	D	S	Y	S	K
Query Conservation
Alig confidence																											.	.	.		.	.							.
Template Conservation																											.	.	.		.	.							.
Template Sequence		R	K	Y	P	G	K	L	T	F	A	Y	N	N	G	S	I	L	E	E	Y	I	G	V	S	D	.	.	.	M	.	.	L	T	Y	N	N	S	.	T	F	K	D	I	D	S	F	V	A	Y	R	K	R
Template Known Secondary structure		S	S	S	T	T								S	S	S									S	S	.	.	.	S	.	.				T	T		.			S	S
Template Predicted Secondary structure																											.	.	.		.	.							.
Template SS confidence
		909	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.				.			.	.	.	.	.	940		.	.	.	.	.	.	.	.	.	950	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D