Job Description Q22070 Confidence 99.65% Date Sat Apr 13 12:57:32 BST 2013 Rank 27 Aligned Residues 173 % Identity 12% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.		.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.				.	.	.	.	670	.	.	.	.	.	.
Predicted Secondary structure																																																.																				.	.	.
Query SS confidence																																																.																				.	.	.
Query Sequence		V	T	E	E	W	F	H	G	R	C	E	R	D	E	A	K	K	R	I	L	E	H	K	E	K	G	N	G	L	F	M	I	R	D	S	N	L	F	I	G	D	F	S	L	S	I	.	L	H	D	G	K	V	H	H	V	R	I	R	S	K	I	I	D	K	E	.	.	.	K	K	Y	Y	F	M	D	N	K	V	C
Query Conservation																																																.																				.	.	.
Alig confidence									.														.	.	.																							.																				.	.	.
Template Conservation									.														.	.	.
Template Sequence		I	N	H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	.	.	.	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R	Y
Template Known Secondary structure					T	T			.												T	T	.	.	.	S		T	T								S	S		T	T										T	T											S		S	S	T	T	S			S					T	T
Template Predicted Secondary structure									.														.	.	.
Template SS confidence
		4	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.				.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		677	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.		.	.	.	.	.	.	.	.	740	.				.	.	.	.	.	.	.	.	750	.	.
Predicted Secondary structure																																																									.											.	.	.
Query SS confidence																																																									.											.	.	.
Query Sequence		D	T	L	Y	E	L	V	S	Y	Y	T	R	H	Y	L	T	T	A	H	F	K	M	V	L	T	I	P	C	P	Q	P	Q	P	H	L	N	Q	P	W	F	S	A	T	A	D	K	E	K	A	E	E	L	L	S	L	.	V	P	E	D	G	A	F	L	I	R	.	.	.	T	S	S	T	D	S	S	V	Y	V	L
Query Conservation																																																									.											.	.	.
Alig confidence														.														.	.	.	.	.	.	.	.	.	.	.					.	.													.											.	.	.
Template Conservation														.														.	.	.	.	.	.	.	.	.	.	.					.	.
Template Sequence		H	D	L	D	Q	I	I	V	E	Y	L	Q	.	N	K	I	R	L	L	N	E	L	T	S	N	E	.	.	.	.	.	.	.	.	.	.	.	K	F	K	A	.	.	G	T	K	K	E	V	V	K	F	I	E	D	Y	S	K	V	N	P	K	K	S	V	Y	Y	F	S	L	N	Y	E	N	P	G	W	F	Y	L
Template Known Secondary structure		S	S								T			.											T	S	T	.	.	.	.	.	.	.	.	.	.	.	T				.	.	S																	T	T										T	T	S	T	T
Template Predicted Secondary structure														.														.	.	.	.	.	.	.	.	.	.	.					.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.												.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		753	.	.	.	.			.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		S	L	K	V	D	.	.	G	E	F	W	H	Y	R	L	K	R	D	G	R	I	F	V	V	N	Q	K	V	F	E	N	L	N	Q	I	V	E	F	Y	A	N
Query Conservation							.	.
Alig confidence							.	.
Template Conservation
Template Sequence		I	F	K	L	N	A	E	S	K	L	Y	I	W	N	V	K	L	T	H	T	G	F	F	L	V	N	Y	N	Y	P	T	V	I	Q	L	C	N	G	F	K	T
Template Known Secondary structure					S	S	T	T	S											S	S	S				T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D