Job Description Q22070 Confidence 99.46% Date Sat Apr 13 12:57:32 BST 2013 Rank 41 Aligned Residues 119 % Identity 17% Template c3l9bA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:otoferlin; PDBTitle: crystal structure of rat otoferlin c2a Resolution 1.95 Å

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		1111	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.			1180	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		I	R	L	N	V	Q	V	I	G	G	R	H	L	S	R	K	D	K	N	K	G	I	C	S	P	F	V	E	I	E	I	I	G	M	P	C	D	T	K	V	F	Q	T	K	T	I	A	S	N	G	L	N	P	I	W	N	Q	T	F	T	F	E	I	Q	C	P	E	V	A	.	.	L	I	R	F	H	V	E	D	G
Query Conservation																																																																							.	.
Alig confidence																.	.	.	.	.	.															.	.	.	.	.																															.	.
Template Conservation																.	.	.	.	.	.															.	.	.	.	.
Template Sequence		M	A	L	I	V	H	L	K	T	V	S	E	L	R	.	.	.	.	.	.	G	R	A	D	R	I	A	K	V	T	F	R	G	Q	.	.	.	.	.	S	F	Y	S	R	V	L	E	N	C	E	D	V	A	D	F	D	E	T	F	R	W	P	V	A	S	S	I	D	R	N	E	V	L	E	I	Q	I	F	N	Y
Template Known Secondary structure													S			.	.	.	.	.	.	S											T	T		.	.	.	.	.												S													S	S				T	T
Template Predicted Secondary structure																.	.	.	.	.	.															.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.							.	.	.	.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		1189	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.				.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		D	F	V	G	P	K	T	D	P	F	I	G	Q	A	V	F	P	V	D	S	I	R	C	G	F	R	S	.	.	.	V	P	L	K	N	Q	Y	S	E	E	L	E	L	S	S	L	L	V	D	V	Q	M	C	S	R	E	G	T
Query Conservation																													.	.	.
Alig confidence						.	.																						.	.	.														.
Template Conservation						.	.																																						.
Template Sequence		S	K	V	F	.	.	S	N	K	L	I	G	T	F	R	M	V	L	Q	K	V	V	E	E	N	R	V	E	V	S	D	T	L	I	D	D	N	N	A	I	I	K	T	.	S	L	S	M	E	V	R	Y	Q	A	A	D	G	T
Template Known Secondary structure			T	T	S	.	.												S							S											T	T	S						.											T	T
Template Predicted Secondary structure						.	.																																						.
Template SS confidence
		70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D