27/04/2013 16:10:29 : INFO  : Run start: Sat Apr 27 16:10:29 BST 2013
27/04/2013 16:10:29 : INFO  : Initialised job
27/04/2013 16:10:29 : INFO  : Initialised job:
Sequence
>batch____
MQHGSLGPSSSSRKTTVTSTAGSVHLHHRSSNGFSTASRAQLNRHNEMDFGKMFAAMEKG
HKVCKIAVLKKWDPAYKQLTLDRYSRQIFLTKLELSAVRNKPTILDIRQIREVQTLNYKL
NTIKVDDKWKKDREIVNFDSKAILIISYGMGFALSYWILLFESEDACKLWSQGLHNLMMD
TRDRDSSPHPLRIERFLHKHFLSLMSPANDAVARKHMKPFVQTSLQFKVQSDQLQQVTED
QMNSDQFSFASRQLIHVPELFSSRFADLAEKHERKGLVVTFQNFLRFLDGKQFDELASNR
TRALEFLNRYFQEDQAYFGDRNEPSMTVFEFCDFLFSRENSLWDPTNEKVTHDMSRPLSH
YWIASSHNTYLTGDQLRSESSLDCYAQALLMGCRCIELDCWDGQKKPGSAEFIDIVIYHG
YTMTSKILLRDVLHVIRHYAFVTSEYPVILSIEDNCSVPAQRLLAQELKDILGDYLLTQP
ANREEKQLPSPAALKKKIIVKHKKLPIESEDLAAVVKTDEFQDTEIISRECVKKGILMVK
NNNSHEWTSHVFILFPDRLCYLIQTADPENPNDDTVSVSGDEEREEETPSGFGVKPEEMH
VTEEWFHGRCERDEAKKRILEHKEKGNGLFMIRDSNLFIGDFSLSILHDGKVHHVRIRSK
IIDKEKKYYFMDNKVCDTLYELVSYYTRHYLTTAHFKMVLTIPCPQPQPHLNQPWFSATA
DKEKAEELLSLVPEDGAFLIRTSSTDSSVYVLSLKVDGEFWHYRLKRDGRIFVVNQKVFE
NLNQIVEFYANREFVRGISLRFPVNEKDISHLTAELAEARTPGCYMDLKDLDKEVQARAL
RPYRGTADDELSFPANVIITVLRKEEGLWRGRYGSLTGWFPSAHVQEILPEKVSTSETSN
YNTIELAGTLIERIHDADRPNVIRISQSNQHWMNKQYYLLAASSSEEADGWQNNLFELTR
SVNTKMSILRTKEKEKRIAAELSNLVVYCQAVPFDPAHIYNDAFYEMCSFVEGKLDKLVE
KGLLPFNSRKLSRVYPNGSRITSNNYSPVPMWNAGCHMVALNYQTGDKPMQLNQGKFLAN
GRCGYLLKPDYMLTDDFDPTNTEKFATAYPIRLNVQVIGGRHLSRKDKNKGICSPFVEIE
IIGMPCDTKVFQTKTIASNGLNPIWNQTFTFEIQCPEVALIRFHVEDGDFVGPKTDPFIG
QAVFPVDSIRCGFRSVPLKNQYSEELELSSLLVDVQMCSREGTQLIRSSSHFLQASRLAP
VFAHRKITNGDSIPREMAPRLRTSATDRSLDSPTNSESRATLLSGQRGSQDSMDSAAETS
SIASGTISSRDGKKKQNWLKKFSFGKSSKS

27/04/2013 16:10:29 : INFO  : Checked sequence
27/04/2013 16:10:29 : INFO  : Finding homologues with PSI-BLAST
27/04/2013 16:10:29 : INFO  : PSI-BLAST 3 iterations
27/04/2013 16:15:11 : INFO  : PSI-BLAST 5 iterations
27/04/2013 16:22:07 : INFO  : Finished PSI-BLAST
27/04/2013 16:22:07 : INFO  : Running Buildali to generate a3m file
27/04/2013 16:51:24 : INFO  : Converting to HMM
27/04/2013 16:51:26 : INFO  : Calibrating HMM
27/04/2013 16:51:55 : INFO  : Searching HMM database
27/04/2013 17:16:45 : INFO  : Finished buildali
27/04/2013 17:16:45 : INFO  : Predicting secondary structure
27/04/2013 17:16:46 : INFO  : Predicted secondary structure (PSI-Pred)
27/04/2013 17:16:46 : INFO  : Predicting Disordered regions
27/04/2013 17:16:46 : INFO  : Predicted Disorder (Disopred)
27/04/2013 17:16:46 : INFO  : Running memsat_svm check
27/04/2013 17:16:48 : INFO  : Globular protein
27/04/2013 17:16:48 : INFO  : Predicted Transmembrane (memsat_svm) ID '810548c15e619017'
27/04/2013 17:16:48 : INFO  : Initialising fold library search
27/04/2013 17:16:48 : INFO  : Initialised search input
27/04/2013 17:16:48 : INFO  : Building Ensemble models
27/04/2013 17:16:48 : INFO  : Building hh.c3ohmB_.model.1.pdb
27/04/2013 17:16:49 : INFO  : Building hh.c3qr0A_.model.2.pdb
27/04/2013 17:16:50 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/810548c15e619017/hh.c3qr0A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/810548c15e619017/c3qr0A_.2.pdb
27/04/2013 17:16:50 : INFO  : Building hh.c2fjuB_.model.3.pdb
27/04/2013 17:16:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/810548c15e619017/hh.c2fjuB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/810548c15e619017/c2fjuB_.3.pdb
27/04/2013 17:16:51 : INFO  : Building hh.c1djyB_.model.4.pdb
27/04/2013 17:16:53 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/810548c15e619017/hh.c1djyB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/810548c15e619017/c1djyB_.4.pdb
27/04/2013 17:16:53 : INFO  : Building c3ohmB_.1.pdb
27/04/2013 17:16:55 : INFO  : Building c3qr0A_.2.pdb
27/04/2013 17:16:56 : INFO  : Building c2fjuB_.3.pdb
27/04/2013 17:16:57 : INFO  : Building c1djyB_.4.pdb
27/04/2013 17:16:57 : INFO  : Building d2zkmx4.5.pdb
27/04/2013 17:16:58 : INFO  : Building d1qasa3.6.pdb
27/04/2013 17:16:58 : INFO  : Building c3gqiB_.7.pdb
27/04/2013 17:16:59 : INFO  : Building c2b3oA_.8.pdb
27/04/2013 17:16:59 : INFO  : Building c3ps5A_.9.pdb
27/04/2013 17:17:00 : INFO  : Building d2zkmx2.10.pdb
27/04/2013 17:17:00 : INFO  : Building c2shpA_.11.pdb
27/04/2013 17:17:01 : INFO  : Building d1qasa2.12.pdb
27/04/2013 17:17:01 : INFO  : Building c2lqnA_.13.pdb
27/04/2013 17:17:02 : INFO  : Building c4fl2A_.14.pdb
27/04/2013 17:17:02 : INFO  : Building c2oq1A_.15.pdb
27/04/2013 17:17:03 : INFO  : Building c2eyzA_.16.pdb
27/04/2013 17:17:03 : INFO  : Building c2ozoA_.17.pdb
27/04/2013 17:17:04 : INFO  : Building c1a81E_.18.pdb
27/04/2013 17:17:04 : INFO  : Building d2zkmx1.19.pdb
27/04/2013 17:17:05 : INFO  : Building d1qasa1.20.pdb
27/04/2013 17:17:34 : INFO  : Finished HH model building
27/04/2013 17:17:34 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
27/04/2013 17:17:43 : INFO  : html domain output complete ID '810548c15e619017'
27/04/2013 23:03:24 : INFO  : Run end  : Sat Apr 27 23:03:24 BST 2013
