Phyre 2 alignment of Q22070 with c1u3oA_

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Job Description | Q22070
Confidence | 96.55% | Date | Sat Apr 13 12:57:32 BST 2013
Rank | 462 | Aligned Residues | 54
% Identity | 19% | Template | c1u3oA_
PDB info | PDB header:signaling protein | Chain: A: PDB Molecule:huntingtin-associated protein-interacting | PDBTitle: solution structure of rat kalirin n-terminal sh3 domain
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 837 | . | . | 840 | . | . | . | . | . | . | . | . | . | 850 | . | . | . | . | . | . | . | . | . | 860 | . | . | . | . | . | . | . |  |  |  | . | . | 870 | . |  |  |  |  | . | . | . | . | . | . | . | . | 880 | . | . | . | . | . | . | . | . | . | 890
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | R | A | L | R | P | Y | R | G | T | A | D | D | E | L | S | F | P | A | N | V | I | I | T | V | L | R | K | E | E | G | . | . | . | L | W | R | G | . | . | . | . | R | Y | G | S | L | T | G | W | F | P | S | A | H | V | Q | E | I | L | P
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | T | V | V | L | Q | D | F | S | A | A | H | S | S | E | L | S | I | Q | V | G | Q | T | V | E | L | L | E | R | P | S | E | R | P | G | W | C | L | V | R | T | T | E | R | S | P | P | Q | E | G | L | V | P | S | S | T | L | C | I | S | H | S
Template Known Secondary structure |  |  |  |  | S | S |  | B |  |  |  | S | T | T |  |  |  | B |  | T | T |  |  |  |  |  | S | S |  | T | T | S | S | T | T |  |  |  |  |  |  | S | S | S | S | S |  |  |  |  |  |  |  | G | G | G | S |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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