Job Description Q967F3 Confidence 99.74% Date Sat Apr 13 13:12:35 BST 2013 Rank 35 Aligned Residues 120 % Identity 22% Template c3sv1C_ PDB info PDB header:protein binding Chain: C: PDB Molecule:amyloid beta a4 precursor protein-binding family a member PDBTitle: crystal structure of app peptide bound rat mint2 parm Resolution 3.30 Å

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		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		S	W	N	V	Q	Y	I	G	S	F	P	I	S	G	S	Y	V	D	N	L	G	R	R	I	D	S	F	Q	P	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	M	Q	S	V	E	L	S	I	S	V	L	G	V	K	I	C	C	E	.	.	K	T	V	L	M	S	H	S	L	R
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence		I	F	A	A	N	Y	L	G	S	T	Q	L	L	S	E	R	N	P	S	K	N	I	R	M	M	Q	A	Q	E	A	V	S	R	V	K	R	M	Q	K	A	A	K	I	K	K	K	A	N	Q	T	L	T	E	V	D	L	F	I	S	T	Q	R	I	K	V	L	N	A	D	T	Q	E	T	M	M	D	H	A	L	R
Template Known Secondary structure																	S																													T	T	T				S									S	S							T	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	T	D	I	S	A	R	P	D	T	Q	N	I	G	Y	V	A	T	E	P	V	G	R	T	Y	R	R	L	C	H	V	F	H	C	Q	S	L	K	E	A	E	E	I	E	N	V	L	R	N	A	N	Q	S	Q	V	L	A	A	K	Q	P	K	S	A	V
Query Conservation
Alig confidence												.	.											.	.	.											.	.	.
Template Conservation												.	.											.	.	.											.	.	.
Template Sequence		T	I	S	Y	I	A	D	I	G	N	.	.	I	V	V	L	M	A	R	R	K	Q	.	.	.	Y	K	M	I	C	H	V	F	E	S	.	.	.	E	D	A	Q	L	I	A	Q	S	I	G	Q	A	F	S	V	A	Y	Q	E	F	L	R	A	I	N	P	E
Template Known Secondary structure		T								T	T	.	.											.	.	.											.	.	.	T	T																	T	T	S	S
Template Predicted Secondary structure												.	.											.	.	.											.	.	.
Template SS confidence
		457	.	.	460	.	.	.	.	.	.			.	.	.	470	.	.	.	.	.	.				.	.	.	480	.	.	.	.	.	.				.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D