Job Description Q967F3 Confidence 99.80% Date Sat Apr 13 13:12:35 BST 2013 Rank 5 Aligned Residues 129 % Identity 16% Template c3so6A_ PDB info PDB header:protein binding/protein transport Chain: A: PDB Molecule:ldl receptor adaptor protein; PDBTitle: crystal structure of the ldl receptor tail in complex with autosomal2 recessive hypercholesterolemia ptb domain Resolution 1.37 Å Model Dimensions (Å) X:47.833 Y:36.614 Z:32.423

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		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																					.	.	.	.																																						.	.
Query SS confidence																					.	.	.	.																																						.	.
Query Sequence		L	P	A	L	S	W	N	V	Q	Y	I	G	S	F	P	I	S	G	S	.	.	.	.	Y	V	D	N	L	G	R	R	I	D	S	F	Q	P	T	T	S	G	G	M	Q	S	V	E	L	S	I	S	V	L	G	V	K	I	C	C	E	.	.	K	T	V	L	M	S	H	S	L	R	R	V	T	D	I	S	A	R
Query Conservation																					.	.	.	.																																						.	.
Alig confidence																					.	.	.	.																																						.	.
Template Conservation
Template Sequence		M	E	G	M	V	F	S	L	K	Y	L	G	M	T	L	V	E	R	P	K	G	E	E	L	S	A	A	A	V	K	R	I	V	A	T	A	K	A	S	G	K	K	L	Q	K	V	T	L	K	V	S	P	R	G	I	I	L	T	D	S	L	T	S	Q	L	I	E	N	V	S	I	Y	R	I	S	Y	C	T	A	D
Template Known Secondary structure																		S	S	S																				T		S											T	T							T	T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		214	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		P	D	T	Q	N	I	.	G	Y	V	A	T	E	P	V	G	R	T	Y	R	R	L	C	H	V	F	H	C	Q	S	L	K	E	A	E	E	I	E	N	V	L	R	N	A	N	Q	S	Q	V	L	A	A	K	Q	P	K	S	A
Query Conservation								.
Alig confidence								.									.	.
Template Conservation																	.	.
Template Sequence		K	M	H	D	K	V	F	A	Y	I	A	Q	S	Q	Q	.	.	N	E	S	L	E	C	H	A	F	L	C	T	K	R	K	V	A	Q	A	V	T	L	T	V	A	Q	A	F	K	V	A	F	E	F	W	Q	V	S	L	V	P
Template Known Secondary structure		S	S	S	T	T									S	S	.	.	S	S										S	S																								T	T
Template Predicted Secondary structure																	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D