 |
Job Description | Q20196 | Confidence | 2.14% | Date | Fri May 3 21:41:44 BST 2013 |
Rank | 89 | Aligned Residues | 55 |
% Identity | 24% | Template | c3kbgA_ |
PDB info |
PDB header:ribosomal protein | Chain: A: PDB Molecule:30s ribosomal protein s4e; |
PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28.
|
Resolution | 1.75 Å |
|
 |
  |   |
47 | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | R | V | V | V | D | T | K | N | P | V | K | I | I | I | S | K | I | M | F | V | Y | L | Q | P | P | A | I | R | V | S | V | A | S | E | N | A | S | L | K | H | I | L | A | V | T | V | V | R | G | K | T | V | H | N | I | A | L | S | R | L | Q | S | H | R | N | K | Q | Y | E | Y | W | F | A | T |
Query Conservation |   |
  |   |
|   |
|
|   |   |
|
|   |   |
|
|   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|   |
|   |   |
|   |
|
|   |
|
|
|   |
|   |
|
|
|
|
|
|
|
|   |
|
|   |
|   |
|
|   |   |   |
|   |   |   |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |
|   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|   |
|   |   |
|   |   |
|
|
|   |   |
| . | . | . | . |
|   |
|
|   |   |
|   |   |
|
|
|
|   |   |
|
|   |   |
|
|
|
|
|
|   |   |   |   |   |   |
Template Sequence |   |
Y | R | V | V | Y | N | D | Q | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | L | V | L | X | K | E | T | K | E | R | A | S | X | K | . |
. |
. |
. |
L | L | K | V | R | S | K | V | I | A | P | G | N | R | I | Q | L | G | T | H | D | G | R | T | F | I | T | D | D | K | S |
Template Known Secondary structure |   |
 |  |  |  |  |
| T | T | S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |
|
| T | T | G | G | G |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  | G | G | G |  |  |  |  |  |  | T | T | S |
|  |  |  |  |
|
| T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |
|
|  |  |  |
|
|  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | . | 100 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
|
|
|
. | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|