Return to main results Retrieve Phyre Job Id

Job DescriptionQ20196
Confidence2.21%DateFri May 3 21:41:44 BST 2013
Rank84Aligned Residues55
% Identity20%Templatec3u5cE_
PDB info PDB header:ribosomeChain: E: PDB Molecule:40s ribosomal protein s4-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50.........60.........70.........80.........90.........100.........110.........120.
Predicted Secondary structure 





























Query SS confidence 










































































Query Sequence  YRVVVDTKNPVKIIISKIMFVYLQPPAIRVSVASENASLKHILAVTVVRGKTVHNIALSRLQSHRNKQYEYWFAT
Query Conservation    
 

  

  

     
   








 
  
 

 


 
 







 

 
 

   
   

 

Alig confidence 








................














....






























Template Conservation 



 
 

................ 
 
  
  


  
....
 

  
   


  

  





      
Template Sequence  FRLVYDVKG. . . . . . . . . . . . . . . . RFAVHRITDEEASYK. . . . LGKVKKVQLGKKGVPYVVTHDGRTIRYPDPN
Template Known Secondary structure 

B
SSS................
B



TTGGG
....


GGG
TTTS

SS
Template Predicted Secondary structure 



................




....












Template SS confidence 










































































   99100....... ..110.........120.. .......130.........140.........150...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D