Return to main results Retrieve Phyre Job Id

Job DescriptionG5EC32
Confidence56.15%DateSat Apr 13 13:16:31 BST 2013
Rank248Aligned Residues94
% Identity9%Templatec2ihfA_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:single-stranded dna-binding protein; PDBTitle: crystal structure of deletion mutant delta 228-252 r190a of the2 single-stranded dna binding protein from thermus aquaticus
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   704.....710.........720.........730.........740.........
Predicted Secondary structure 































..................................
Query SS confidence 













































. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  LNRGDIIRIIREVDGYWMEGERNGRSGIFPTSYVQINTGNQGDSQK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation     
            
         
  
                ..................................
Alig confidence 

















..

























..................................
Template Conservation 
 

  
 
 
 
     ..
 

 

    
 
  
  
       
 
 
 
 
  


 
 
  
  
    


  
Template Sequence  LEKGQLIFVEGRLEYRQW. . EKDGEKKSEVQVRAEFIDPLEGRGRALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNE
Template Known Secondary structure 

TT

..SSSSSSS





SS


TT



Template Predicted Secondary structure 




..






















Template SS confidence 















































































   70.........80....... ..90.........100.........110.........120.........130.........140.......
 
   750.........760.........770.........780.........790.........
Predicted Secondary structure  ....
































Query SS confidence  . . . .

















































Query Sequence  . . . . MRAIYPFTARSDTELSLKRGEIITRRRQIDSNWLEGSNQIGIVGIFPASY
Query Conservation  ....  
 
        



  

 
 
    
  
  
       
 

  
Alig confidence  ....

















































Template Conservation    
        
  
     
 

  
 
 
 
      

 
  
        
Template Sequence  ERTHFLEVQAWRELAEWASELAKGDGLLVIGRLVNDRFQTRVEALRLERPLEDF
Template Known Secondary structure 


TT

TT










Template Predicted Secondary structure 


















Template SS confidence 





















































   169170.........180.........190.........200.........210.........220..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D