Email l.a.kelley@imperial.ac.uk Description Q20646 Date Fri May 3 21:47:31 BST 2013 Unique Job ID 769c1e9df65d5170

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1t4wa_ 100.0 100 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:p53 DNA-binding domain-like 2 c2rp5A_ 100.0 100 PDB header:transcription Chain: A: PDB Molecule:putative uncharacterized protein cep-1; PDBTitle: solution structure of the oligomerization domain in cep-1 3 c2j1xA_ 99.8 20 PDB header:nuclear protein Chain: A: PDB Molecule:cellular tumor antigen p53; PDBTitle: human p53 core domain mutant m133l-v203a-y220c-n239y-n268d 4 d2ac0a1 99.8 22 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:p53 DNA-binding domain-like 5 c2xipA_ 99.8 23 PDB header:cell cycle Chain: A: PDB Molecule:tumour protein p73; PDBTitle: crystal structure of the dna binding domain of human tp732 refined at 1.8 a resolution 6 d1hu8a_ 99.8 23 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:p53 DNA-binding domain-like 7 c3q06B_ 99.7 23 PDB header:cell cycle/dna Chain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: an induced fit mechanism regulates p53 dna binding kinetics to confer2 sequence specificity 8 c2rmnA_ 99.5 27 PDB header:cell cycle, antitumor protein Chain: A: PDB Molecule:tumor protein 63; PDBTitle: the solution structure of the p63 dna-binding domain 9 d1b0xa_ 61.9 27 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 10 c1b0xA_ 61.9 27 PDB header:transferase Chain: A: PDB Molecule:protein (epha4 receptor tyrosine kinase); PDBTitle: the crystal structure of an eph receptor sam domain reveals2 a mechanism for modular dimerization. 11 c3bq7A_ 57.5 14 PDB header:transferase Chain: A: PDB Molecule:diacylglycerol kinase delta; PDBTitle: sam domain of diacylglycerol kinase delta1 (e35g) 12 c2kg5A_ 48.3 18 PDB header:signaling protein Chain: A: PDB Molecule:arf-gap, rho-gap domain, ank repeat and ph PDBTitle: nmr solution structure of arap3-sam 13 c2dl0A_ 44.5 17 PDB header:signaling protein Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1; PDBTitle: solution structure of the sam-domain of the sam and sh32 domain containing protein 1 14 c2k4pA_ 43.4 16 PDB header:signaling protein Chain: A: PDB Molecule:phosphatidylinositol-3,4,5-trisphosphate 5- PDBTitle: solution structure of ship2-sam 15 d1kx5d_ 41.5 53 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 16 d1eqzb_ 39.7 59 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 17 d1s32d_ 38.2 53 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 18 c3k1rB_ 37.9 22 PDB header:structural protein Chain: B: PDB Molecule:usher syndrome type-1g protein; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans 19 c3hilB_ 37.7 21 PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: sam domain of human ephrin type-a receptor 1 (epha1) 20 c3bs7A_ 37.5 15 PDB header:signaling protein Chain: A: PDB Molecule:protein aveugle; PDBTitle: crystal structure of the sterile alpha motif (sam) domain2 of hyphen/aveugle 21 d1ucva_ not modelled 36.4 22 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 22 d1rg6a_ not modelled 34.3 16 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 23 d1v38a_ not modelled 34.2 17 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 24 c2eaoA_ not modelled 32.9 24 PDB header:signaling protein, transferase Chain: A: PDB Molecule:ephrin type-b receptor 1; PDBTitle: solution structure of the c-terminal sam-domain of mouse2 ephrin type-b receptor 1 precursor (ec 2.7.1.112) 25 d1coka_ not modelled 29.9 21 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 26 d1q2ha_ not modelled 29.9 63 Fold:Dimerisation interlock Superfamily:Phenylalanine zipper Family:Adapter protein APS, dimerisation domain 27 d1sgga_ not modelled 28.5 21 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 28 d1jixa_ not modelled 28.1 50 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:beta-Glucosyltransferase (DNA-modifying) 29 d1x40a1 not modelled 27.2 23 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 30 c2gleA_ not modelled 24.5 17 PDB header:protein binding Chain: A: PDB Molecule:neurabin-1; PDBTitle: solution structure of neurabin sam domain 31 d2f3na1 not modelled 23.6 17 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 32 d2ccqa1 not modelled 23.2 20 Fold:PUG domain-like Superfamily:PUG domain-like Family:PUG domain 33 c1vjqB_ not modelled 22.4 30 PDB header:structural genomics, de novo protein Chain: B: PDB Molecule:designed protein; PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability. 34 c2ke7A_ not modelled 21.6 18 PDB header:protein binding Chain: A: PDB Molecule:ankyrin repeat and sterile alpha motif domain- PDBTitle: nmr structure of the first sam domain from aida1 35 c2jssA_ not modelled 21.5 48 PDB header:chaperone/nuclear protein Chain: A: PDB Molecule:chimera of histone h2b.1 and histone h2a.z; PDBTitle: nmr structure of chaperone chz1 complexed with histone2 h2a.z-h2b 36 c1tmxA_ not modelled 21.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxyquinol 1,2-dioxygenase; PDBTitle: crystal structure of hydroxyquinol 1,2-dioxygenase from2 nocardioides simplex 3e 37 d1imhc2 not modelled 20.9 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:Rel/Dorsal transcription factors, DNA-binding domain 38 d1pdaa2 not modelled 19.6 24 Fold:dsRBD-like Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 39 c3kkaD_ not modelled 19.6 21 PDB header:transferase Chain: D: PDB Molecule:ephrin type-a receptor 2; PDBTitle: co-crystal structure of the sam domains of epha1 and epha2 40 c2e8nA_ not modelled 19.4 19 PDB header:transferase, signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1) 41 c2eamA_ not modelled 19.2 18 PDB header:signaling protein Chain: A: PDB Molecule:putative 47 kda protein; PDBTitle: solution structure of the n-terminal sam-domain of a human2 putative 47 kda protein 42 d1tzyb_ not modelled 19.1 59 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 43 d1wwva1 not modelled 18.5 26 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 44 c2v2gC_ not modelled 18.4 24 PDB header:oxidoreductase Chain: C: PDB Molecule:peroxiredoxin 6; PDBTitle: crystal structure of the c45s mutant of the peroxiredoxin 62 of arenicola marina. monoclinic form 45 c3okzB_ not modelled 18.2 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative uncharacterized protein gbs0355; PDBTitle: crystal structure of protein gbs0355 from streptococcus agalactiae,2 northeast structural genomics consortium target sar127 46 c2kncB_ not modelled 18.0 23 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 47 d1ow5a_ not modelled 17.8 18 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 48 c1ow5A_ not modelled 17.8 18 PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase ste11; PDBTitle: nmr structure of the saccharomyces cerevisiae sam (sterile2 alpha motif) domain 49 c3s88J_ not modelled 17.7 46 PDB header:immune system/viral protein Chain: J: PDB Molecule:envelope glycoprotein; PDBTitle: crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound2 to 16f6 50 d1p7hl2 not modelled 17.6 14 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:Rel/Dorsal transcription factors, DNA-binding domain 51 c3suiB_ not modelled 17.5 83 PDB header:calcium-binding protein Chain: B: PDB Molecule:transient receptor potential cation channel subfamily v PDBTitle: crystal structure of ca2+-calmodulin in complex with a trpv1 c-2 terminal peptide 52 c2qkqA_ not modelled 17.4 26 PDB header:transferase Chain: A: PDB Molecule:ephrin type-b receptor 4; PDBTitle: structure of the sam domain of human ephrin type-b receptor2 4 53 c2jynA_ not modelled 17.4 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0368 protein ypl225w; PDBTitle: a novel solution nmr structure of protein yst0336 from2 saccharomyces cerevisiae. northeast structural genomics3 consortium target yt51/ontario centre for structural4 proteomics target yst0336 54 c1s4xA_ not modelled 17.4 25 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: nmr structure of the integrin b3 cytoplasmic domain in dpc2 micelles 55 d2r7ka1 not modelled 17.1 35 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:PurP N-terminal domain-like 56 c4g5sE_ not modelled 17.1 54 PDB header:cell cycle/signaling protein Chain: E: PDB Molecule:g-protein-signaling modulator 2; PDBTitle: structure of lgn gl3/galphai3 complex 57 c4g5sF_ not modelled 17.1 54 PDB header:cell cycle/signaling protein Chain: F: PDB Molecule:g-protein-signaling modulator 2; PDBTitle: structure of lgn gl3/galphai3 complex 58 c2lcyA_ not modelled 17.0 38 PDB header:viral protein Chain: A: PDB Molecule:virion spike glycoprotein; PDBTitle: nmr structure of the complete internal fusion loop from ebolavirus gp22 at ph 5.5 59 c1oxjA_ not modelled 16.6 18 PDB header:rna binding protein Chain: A: PDB Molecule:rna-binding protein smaug; PDBTitle: crystal structure of the smaug rna binding domain 60 d1d8ba_ not modelled 16.4 9 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 61 c2ddiA_ not modelled 15.7 17 PDB header:protein binding Chain: A: PDB Molecule:wap, follistatin/kazal, immunoglobulin, kunitz PDBTitle: nmr structure of the second kunitz domain of human wfikkn1 62 c2l01A_ not modelled 14.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bvu3908 from bacteroides vulgatus,2 northeast structural genomics consortium target bvr153 63 c3ukzC_ not modelled 14.3 100 PDB header:protein transport/protein binding Chain: C: PDB Molecule:nuclear cap-binding protein subunit 1; PDBTitle: mouse importin alpha: mouse cbp80 cnls complex 64 d1jmsa3 not modelled 14.1 18 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 65 d2f9zc1 not modelled 13.9 28 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:CheD-like 66 d1rvga_ not modelled 13.8 24 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 67 d1id3d_ not modelled 13.5 65 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 68 d1gtka2 not modelled 13.4 24 Fold:dsRBD-like Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 69 c2l02B_ not modelled 13.4 28 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375 70 c1k09B_ not modelled 13.3 50 PDB header:de novo protein Chain: B: PDB Molecule:core module ii; PDBTitle: solution structure of betacore, a designed water soluble2 four-stranded antiparallel b-sheet protein 71 d1oxja1 not modelled 13.3 16 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 72 c4g5sG_ not modelled 13.2 63 PDB header:cell cycle/signaling protein Chain: G: PDB Molecule:g-protein-signaling modulator 2; PDBTitle: structure of lgn gl3/galphai3 complex 73 c2kn8A_ not modelled 13.1 30 PDB header:protein binding, dna binding protein Chain: A: PDB Molecule:dna cleavage and packaging protein large subunit, ul89; PDBTitle: nmr structure of the c-terminal domain of pul89 74 d1gjia2 not modelled 12.9 50 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:Rel/Dorsal transcription factors, DNA-binding domain 75 d1v54g_ not modelled 12.8 50 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIa Family:Mitochondrial cytochrome c oxidase subunit VIa 76 d1doqa_ not modelled 12.8 13 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 77 d1gvfa_ not modelled 12.8 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 78 d1yela1 not modelled 12.7 15 Fold:DNA-binding pseudobarrel domain Superfamily:DNA-binding pseudobarrel domain Family:B3 DNA binding domain 79 c2opiB_ not modelled 12.5 20 PDB header:lyase Chain: B: PDB Molecule:l-fuculose-1-phosphate aldolase; PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from bacteroides2 thetaiotaomicron 80 c3qm3C_ not modelled 12.2 16 PDB header:lyase Chain: C: PDB Molecule:fructose-bisphosphate aldolase; PDBTitle: 1.85 angstrom resolution crystal structure of fructose-bisphosphate2 aldolase (fba) from campylobacter jejuni 81 c3lvgD_ not modelled 12.0 16 PDB header:structural protein Chain: D: PDB Molecule:clathrin light chain b; PDBTitle: crystal structure of a clathrin heavy chain and clathrin light chain2 complex 82 c3csyJ_ not modelled 12.0 38 PDB header:immune system/viral protein Chain: J: PDB Molecule:envelope glycoprotein gp2; PDBTitle: crystal structure of the trimeric prefusion ebola virus glycoprotein2 in complex with a neutralizing antibody from a human survivor 83 c2lmrA_ not modelled 11.9 14 PDB header:signaling protein Chain: A: PDB Molecule:ankyrin repeat and sam domain-containing protein 1a; PDBTitle: solution structure of the first sam domain of odin 84 d1hd2a_ not modelled 11.8 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 85 c2xhfA_ not modelled 11.8 6 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin 5; PDBTitle: crystal structure of peroxiredoxin 5 from alvinella pompejana 86 c3d3rA_ not modelled 11.8 29 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 87 d1miua4 not modelled 11.8 35 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 88 c2o1uA_ not modelled 11.5 36 PDB header:chaperone Chain: A: PDB Molecule:endoplasmin; PDBTitle: structure of full length grp94 with amp-pnp bound 89 d1a66a_ not modelled 11.5 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:Rel/Dorsal transcription factors, DNA-binding domain 90 c3n9tA_ not modelled 11.2 17 PDB header:oxidoreductase Chain: A: PDB Molecule:pnpc; PDBTitle: cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas2 putida dll-e4 91 c3au9A_ not modelled 10.8 23 PDB header:isomerase/isomerase inhibitor Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of the quaternary complex-1 of an isomerase 92 c3q94B_ not modelled 10.8 20 PDB header:lyase Chain: B: PDB Molecule:fructose-bisphosphate aldolase, class ii; PDBTitle: the crystal structure of fructose 1,6-bisphosphate aldolase from2 bacillus anthracis str. 'ames ancestor' 93 c1m8oB_ not modelled 10.7 25 PDB header:membrane protein Chain: B: PDB Molecule:platele integrin beta3 subunit: cytoplasmic PDBTitle: platelet integrin alfaiib-beta3 cytoplasmic domain 94 c3ihtB_ not modelled 10.6 44 PDB header:transferase Chain: B: PDB Molecule:s-adenosyl-l-methionine methyl transferase; PDBTitle: crystal structure of s-adenosyl-l-methionine methyl transferase2 (yp_165822.1) from silicibacter pomeroyi dss-3 at 1.80 a resolution 95 c4de8A_ not modelled 10.5 18 PDB header:membrane protein Chain: A: PDB Molecule:cps2a; PDBTitle: lytr-cps2a-psr family protein with bound octaprenyl monophosphate2 lipid 96 d1b4fa_ not modelled 10.5 19 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 97 c2cqtA_ not modelled 9.8 9 PDB header:transferase Chain: A: PDB Molecule:cellobiose phosphorylase; PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate 98 d1ooaa2 not modelled 9.7 29 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:Rel/Dorsal transcription factors, DNA-binding domain 99 c2iswB_ not modelled 9.7 16 PDB header:lyase Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase; PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate