Job Description Q20646 Confidence 99.71% Date Fri May 3 21:47:31 BST 2013 Rank 7 Aligned Residues 175 % Identity 23% Template c3q06B_ PDB info PDB header:cell cycle/dna Chain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: an induced fit mechanism regulates p53 dna binding kinetics to confer2 sequence specificity Resolution 3.20 Å Model Dimensions (Å) X:55.697 Y:49.106 Z:44.113

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		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	D	V	L	K	Q	K	V	A	K	S	S	D	M	A	F	A	I	S	S	E	H	E	K	Y	L	W	T	K	M	G	C	L	V	P	I	Q	V	K	W	K	L	D	K	R	H	F	N	S	N	L	S	L	R	I	R	F	V	K	Y	D	K	K	E	N	V	E	Y	A	I	R	N	P	R	S	D	V	M	K
Query Conservation
Alig confidence																			.	.	.																										.	.	.												.													.	.	.	.	.	.	.
Template Conservation																			.	.	.																										.	.	.												.													.	.	.	.	.	.	.
Template Sequence		R	L	G	F	L	H	S	G	T	A	K	S	V	T	C	T	Y	.	.	.	S	P	A	L	N	K	M	F	V	Q	L	A	K	T	V	P	V	Q	L	Y	V	D	S	T	P	.	.	.	P	P	G	T	R	V	R	A	M	A	I	.	Y	K	Q	S	Q	H	M	T	E	V	V	R	.	.	.	.	.	.	.	R
Template Known Secondary structure				B								T	T		S			B	.	.	.		T	T	T							T	T										S	S			.	.	.		T	T									.			S	T	T	T	T	T	S				.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.																										.	.	.												.													.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.				.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.								.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.				.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.					.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																.							.	.	.																						.	.	.	.
Query SS confidence																.							.	.	.																						.	.	.	.
Query Sequence		C	R	S	H	T	E	R	E	Q	H	F	P	F	D	.	S	F	F	Y	I	R	.	.	.	N	S	E	H	E	F	S	Y	S	A	E	K	G	S	T	F	T	L	I	M	Y	.	.	.	.	P	G	A	V	Q	A	N	F	D	I	I	F	M	C	Q	E	K	C	L	D	L	D	D	R	R	K	T	M	C	L	A
Query Conservation																.							.	.	.																						.	.	.	.
Alig confidence																.							.	.	.																						.	.	.	.																													.
Template Conservation																																																																															.
Template Sequence		C	P	H	H	E	R	S	S	D	S	D	G	L	A	P	P	Q	H	L	I	R	V	E	G	N	L	R	A	E	Y	L	D	D	P	N	T	F	R	H	S	V	V	V	P	Y	E	P	P	E	V	G	S	D	Y	T	T	I	Y	F	K	F	M	C	N	S	S	C	M	G	G	M	N	R	R	P	I	L	.	V	I
Template Known Secondary structure							T				S		S	S	S		S	S		S				S	S		T	T							T	T	T														S	S												S		T	T		T	T	T	T	T	T					.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	L	D	D	E	N	G	N	E	I	L	H	A	Y	I	K	Q	V	R	I	V	A	Y	P	R	R	D	W	K	N	F	C	E	R	E	D	A	K	Q	K
Query Conservation
Alig confidence											.																						.	.
Template Conservation											.																						.	.
Template Sequence		I	T	L	E	D	S	S	G	N	.	L	L	G	R	D	S	F	E	V	R	V	C	A	C	P	G	R	D	R	R	T	.	.	E	E	E	N	L	R	K	K
Template Known Secondary structure							T	T	S		.		S											S		T	T						.	.				T	T	S	S	S
Template Predicted Secondary structure											.																						.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D