 |
| Job Description | Q45FX5 | | Confidence | 99.87% | Date | Fri May 3 21:26:37 BST 2013 |
| Rank | 45 | Aligned Residues | 112 |
| % Identity | 32% | Template | c1wyrA_ |
| PDB info |
PDB header:structural protein | Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 6; |
PDBTitle: solution structure of the ch domain of human rho guanine2 nucleotide exchange factor 6
|
| Resolution | UNK |
|
 |
|   |   |
38 | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
| . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
D | L | W | I | G | C | A | R | W | L | R | D | M | K | V | L | T | T | D | K | . |
. |
. |
N | G | T | M | L | E | F | A | S | V | L | R | D | G | I | L | L | C | R | L | A | N | T | L | V | P | N | G | I | D | Q | K | K | I | M | R | T | N | Q | P | S | P | F | L | C | C | N | N | I | N | Y | F | A | M | F | C | K |
| Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
| Template Conservation |   |
  |   |
|
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|
|
|
|
|   |
|   |
|   |
|   |   |
| . | . |   |   |
|   |   |   |   |   | . |   |   |
|   |   |   |
|
|
|   |   |
|
|   |   |
| . |
| Template Sequence |   |
S | G | E | E | Q | I | V | T | W | L | I | S | L | G | V | L | E | S | P | K | K | T | I | C | D | P | E | E | F | L | K | S | S | L | K | N | G | V | V | L | C | K | L | I | N | R | L | M | P | G | S | V | . |
. |
E | K | F | C | L | D | P | Q | . |
T | E | A | D | C | I | N | N | I | N | D | F | L | K | G | C | . |
| Template Known Secondary structure |   |
| S |  |  |  |  |  |  |  |  |  |  |  | T | S | S |
|
|
| S | S |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  | S | T | T |
|
| . | . | S |
|
|
| S | S |
|
| . | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
. | . | 60 | . | . | . | . | . | |
. | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | |
|   |
|   |   |
115 | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
T | Y | F | N | L | E | D | A | D | L | F | T | A | E | D | L | Y | Y | M | N | G | F | Q | K | V | L | K | T | L | S | F | L | S | H | T | K | E | S | L | S | R | G |
| Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
| Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
. | . | . |
|   |   |   |   |   |
|
|   |   |   |
|
|   |
|   |
|
|   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |
| Template Sequence |   |
. |
. |
. |
A | T | L | Q | V | E | I | F | D | P | D | D | L | Y | S | G | V | N | F | S | K | V | L | S | T | L | L | A | V | N | K | A | T | E | S | G | P | S | S |
| Template Known Secondary structure |   |
. | . | . |  |  |  | T |
|
|
|
|
|  |  |  |  |  | T |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|
|
|
|
| Template Predicted Secondary structure |   |
. | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|
|
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
Phyre2 is part of Genome3D |
|