Phyre 2 alignment of Q45FX5 with c1lb1C

Job Description Q45FX5
Confidence 100.00% Date Fri May 3 21:26:37 BST 2013

Rank 23 Aligned Residues 304

% Identity 24% Template c1lb1C_

PDB info PDB header:signaling protein Chain: C: PDB Molecule:guanine nucleotide exchange factor dbs; PDBTitle: crystal structure of the dbl and pleckstrin homology2 domains of dbs in complex with rhoa

Resolution 2.81 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.									.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.
Query Sequence	T	L	K	R	N	R	C	I	R	E	L	Y	D	T	E	K	N	Y	V	A	Q	A	L	V	T	I	I	K	T	F	Y	E	P	L	K	G	.	.	.	.	.	.	.	.	I	I	P	T	S	D	Y	N	I	I	F	G	N	I	E	E	I	N	V	L	H	T	A	L	L	A	D	L	E	Y	P	V	K	V	A	L
Query Conservation																																					.	.	.	.	.	.	.	.
Alig confidence																						.															.	.	.	.	.	.	.	.																																	.	.	.	.
Template Conservation																						.																																																							.	.	.	.
Template Sequence	A	I	L	R	R	H	V	M	N	E	L	L	D	T	E	R	A	Y	V	E	E	.	L	L	C	V	L	E	G	Y	A	A	E	M	D	N	P	L	M	A	H	L	I	S	T	G	L	Q	N	K	K	N	I	L	F	G	N	M	E	E	I	Y	H	F	H	N	R	I	F	L	R	E	L	E	S	C	.	.	.	.
Template Known Secondary structure																						.								T	T	G	G	G	G		G	G	G	G	G	G	S							T						T	T											T							T	T	.	.	.	.
Template Predicted Secondary structure																						.																																																							.	.	.	.
Template SS confidence
	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650		.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.

	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	L	S	D	A	T	P	P	R	P	I	S	L	N	E	C	V	P	Q	T	I	G	E	V	F	I	K	Y	R	D	Q	F	L	A	Y	G	K	Y	C	S	N	L	P	D	S	R	K	L	S	N	E	L	L	K	T	N	E	F	I	S	R	N	I	N	E	L	T	A	Q	G	N	C	K	F	G	M	N	D	L	L
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.															.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.															.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	C	P	E	L	V	G	R	C	F	L	E	R	M	E	E	F	Q	I	Y	E	K	Y	C	Q	N	K	P	R	S	E	S	L	W	R	Q	C	.	S	D	C	P	F	F	Q	E	C	Q	K	K	L	D	.	.	.	.	H	K	L	S	L	D	S	Y	L
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		G	G	G							T	T	T	T	G	G	G																				.	T	T	S											T	.	.	.	.		S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.															.	.	.	.
Template SS confidence
															705	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.		.	.	.	.	.	.	.	750	.	.	.	.	.	.					.	.	.	760	.	.	.	.	.

	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	C	V	P	F	Q	R	L	T	K	Y	P	L	L	L	K	E	L	Q	K	K	T	D	L	A	S	P	D	R	K	S	L	E	E	A	V	E	V	M	E	D	V	C	N	Y	I	N	E	E	S	R	D	T	N	A	I	K	V	I	D	E	I	E	Q	S	I	T	D	L	S	M	P	L	N	V	K	L	H	D	Y	G
Query Conservation
Alig confidence																							.																																													.	.	.	.	.	.	.	.
Template Conservation																							.																																													.	.	.	.	.	.	.	.
Template Sequence	L	K	P	V	Q	R	I	T	K	Y	Q	L	L	L	K	E	M	L	K	Y	S	K	.	H	C	E	G	A	E	D	L	Q	E	A	L	S	S	I	L	G	I	L	K	A	V	N	D	S	M	H	L	I	A	I	T	G	Y	D	G	N	L	G	D	L	G	K	L	.	.	.	.	.	.	.	.	L	M	Q	G	S
Template Known Secondary structure	T							T	T											T		T	.	T	S	T	T																									T	T					S	S		S	G	G	G				.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.																																													.	.	.	.	.	.	.	.
Template SS confidence
	766	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.		.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.									.	.	.	.	.

	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	V	N	L	D	G	E	V	K	M	A	E	S	T	L	T	Q	A	G	K	P	K	Q	R	Y	I	F	L	F	D	K	V	I	V	V	C	K	A	A	N	K	V	M	A	A	K	T	T	G	A	S	A	R	T	N	T	F	T	Y	K	N	A	Y	V	M	S	E	L	T	I	D	K	N	A	S	L	D	V	K	S
Query Conservation
Alig confidence									.	.	.	.	.																										.	.	.	.	.
Template Conservation									.	.	.	.	.																										.	.	.	.	.
Template Sequence	F	S	V	W	T	D	H	K	.	.	.	.	.	K	G	L	A	R	F	K	P	M	Q	R	H	L	F	L	H	E	K	A	V	L	F	C	K	K	.	.	.	.	.	R	E	E	N	G	E	G	Y	E	K	A	P	S	Y	S	Y	K	Q	S	L	N	M	T	A	V	G	I	T	E	N	V	K	G	D	T	K	K
Template Known Secondary structure									.	.	.	.	.					S	S	S										S	S								.	.	.	.	.					S	S	S	G	G	G	S											G	G	G							B	T	T	B	T	T
Template Predicted Secondary structure									.	.	.	.	.																										.	.	.	.	.
Template SS confidence
	837	.	.	840	.	.	.	.						.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.						870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.

	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	G	T	I	T	R	R	T	Q	Y	V	I	I	M	T	R	D	R	N	E	N	N	E	I	T	Q	L	T	F	Y	F	K	N	E	A	T	R	N	N	W	M	T	A	L	L	L	S	K	S	N
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	F	E	I	W	Y	N	A	R	E	.	.	.	.	E	V	Y	I	I	Q	A	P	T	P	E	I	K	A	A	W	V	N	E	I	R	K	V	L	T	S
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.						G	G	G	T	.	.	.	.								S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template SS confidence
												913	.	.	.	.	.	.	920	.					.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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Phyre2 is part of Genome3D