Job Description Q21408 Confidence 23.40% Date Sat Apr 13 12:50:02 BST 2013 Rank 377 Aligned Residues 103 % Identity 17% Template c3cuqA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.61 Å

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		2280	.	.	.	.	.	.	.	.	.	2290	.	.	.	.	.	.	.	.	.	2300			.	.	.	.	.	.				.	.	.	2310	.	.	.	.	.	.	.	.	.	2320	.						.	.	.	.	.	.	.	.	2330									.	.	.	.	.	.	.	.	.	2340	.
Predicted Secondary structure																							.	.							.	.	.																.	.	.	.	.										.	.	.	.	.	.	.	.
Query SS confidence																							.	.							.	.	.																.	.	.	.	.										.	.	.	.	.	.	.	.
Query Sequence		S	E	E	A	L	R	E	F	S	M	M	F	K	H	F	D	K	E	K	T	G	.	.	R	L	D	H	Q	Q	.	.	.	F	K	S	C	L	R	A	L	G	Y	D	L	P	M	V	.	.	.	.	.	D	E	G	Q	P	E	P	E	F	.	.	.	.	.	.	.	.	Q	R	I	L	D	I	V	D	P	N	R
Query Conservation																							.	.							.	.	.																.	.	.	.	.										.	.	.	.	.	.	.	.
Alig confidence																							.	.							.	.	.																.	.	.	.	.										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	S	K	Q	L	D	M	F	K	T	N	L	E	E	F	A	S	K	H	K	Q	E	I	R	K	N	P	E	F	R	V	Q	F	Q	D	M	C	A	T	I	G	V	D	P	L	A	S	G	K	G	F	W	S	E	M	L	G	V	G	D	F	Y	Y	E	L	G	V	Q	I	I	E	V	C	L	A	L	K	H	R	N
Template Known Secondary structure		T																																								T			T	T	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		2342	.	.	.	.	.	.	.	2350	.	.	.	.	.	.	.	.	.	2360			.	.	.	.	.	.	.	.	.	2370	.	.	.	.	.	.	.	.	.	2380	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		D	G	Y	V	T	L	Q	E	Y	M	A	F	M	I	S	K	E	T	E	.	.	N	I	Q	S	S	E	E	I	E	M	A	F	R	A	L	S	K	E	F	R	P	Y
Query Conservation																					.	.
Alig confidence																					.	.
Template Conservation
Template Sequence		G	G	L	I	T	L	E	E	L	H	Q	Q	V	L	K	G	R	G	K	F	A	Q	D	V	S	Q	D	D	L	I	R	A	I	K	K	L	K	A	L	G	T	G	F
Template Known Secondary structure		S	S														T	T	T	T			S	S														G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D