Job Description Q21408 Confidence 25.55% Date Sat Apr 13 12:50:02 BST 2013 Rank 363 Aligned Residues 37 % Identity 22% Template c2k6xA_ PDB info PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2366	.	.	.	2370	.	.	.	.	.	.	.	.	.			2380	.	.	.	.	.	.	.	.	.	2390	.	.	.	.								.	.	.	.	.	2400	.	.
Predicted Secondary structure																.	.																.	.	.	.	.	.	.
Query SS confidence																.	.																.	.	.	.	.	.	.
Query Sequence		E	E	I	E	M	A	F	R	A	L	S	K	E	F	.	.	R	P	Y	V	T	A	E	E	L	Y	A	N	L	T	P	.	.	.	.	.	.	.	E	Q	A	E	F	C	I	R
Query Conservation																.	.																.	.	.	.	.	.	.
Alig confidence																.	.																.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Q	I	E	R	R	I	K	K	L	I	S	L	G	K	K	K	G	Y	I	T	Y	E	D	I	D	K	A	F	P	P	D	F	E	G	F	D	T	N	L	I	E	R	I	H	E
Template Known Secondary structure																			S	S		B									S		S		S	S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D