Job Description Q21408 Confidence 98.73% Date Sat Apr 13 12:50:02 BST 2013 Rank 116 Aligned Residues 138 % Identity 18% Template c2julA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:calsenilin; PDBTitle: nmr structure of dream Resolution UNK

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		2274	.	.	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290	.	.	.	.	.	.	.	.	.	2300	.	.	.	.	.	.	.	.	.	2310	.	.	.	.	.	.	.	.	.	2320	.	.	.	.	.	.	.	.	.	2330	.	.	.	.	.	.	.	.	.	2340	.	.	.	.	.	.	.	.	.	2350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	Q	S	G	V	S	E	E	A	L	R	E	F	S	M	M	F	K	H	F	D	K	E	K	T	G	R	L	D	H	Q	Q	F	K	S	C	L	R	A	L	G	Y	D	L	P	M	V	D	E	G	Q	P	E	P	E	F	Q	R	I	L	D	I	V	D	P	N	R	D	G	Y	V	T	L	Q	E	Y	M	A	F
Query Conservation
Alig confidence																				.	.																											.	.	.	.	.	.
Template Conservation																				.	.																											.	.	.	.	.	.
Template Sequence		Q	A	Q	T	K	F	T	K	K	E	L	Q	S	L	Y	R	G	F	.	.	K	N	E	C	P	T	G	L	V	D	E	D	T	F	K	L	I	Y	S	Q	F	F	P	Q	G	D	.	.	.	.	.	.	A	T	T	Y	A	H	F	L	F	N	A	F	D	A	D	G	N	G	A	I	H	F	E	D	F	V	V	G
Template Known Secondary structure					T	T	S													.	.					T	T	S	S																S	S		.	.	.	.	.	.												S	S		S			S				S
Template Predicted Secondary structure																				.	.																											.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		2354	.	.	.	.	.	2360	.	.	.	.	.	.	.	.	.	2370	.	.	.	.	.	.	.	.	.	2380	.	.	.	.	.	.	.	.	.	2390																				.	.	.	.	.	.	.	.	.	2400	.	.	.	.	.	.	.	.	.	2410	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	S	K	E	T	E	N	I	Q	S	S	E	E	I	E	M	A	F	R	A	L	S	K	E	F	R	P	Y	V	T	A	E	E	L	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	T	P	E	Q	A	E	F	C	I	R	R	M	K	P	Y	M	D	A	I	S	G	R
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation			.	.																																																																					.	.	.	.	.	.	.	.
Template Sequence		L	.	.	S	I	L	L	R	G	T	V	H	E	K	L	K	W	A	F	N	L	Y	D	I	N	K	D	G	C	I	T	K	E	E	M	L	A	I	M	K	S	I	Y	D	M	M	G	R	H	T	Y	P	I	L	R	E	D	A	P	L	E	H	V	E	R	F	F	Q	K	M	D	.	.	.	.	.	.	.	.	R
Template Known Secondary structure			.	.					S														T			S	S	S	S		B																					S			S																S		.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.																																																																					.	.	.	.	.	.	.	.
Template SS confidence
		155			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.									.
		2415	.	.	.	.	2420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	Q	G	G	L	D	Y	E	Q	F	V	H	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Q	D	G	V	V	T	I	D	E	F	L	E	T	C
Template Known Secondary structure		S	T	T		S	B
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D