Job Description Q21408 Confidence 30.96% Date Sat Apr 13 12:50:02 BST 2013 Rank 338 Aligned Residues 98 % Identity 16% Template c1u5tA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex Resolution 3.60 Å

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		2281	.	.	.	.	.	.	.	.	2290	.	.	.	.	.	.	.	.	.	2300	.	.	.						.	.	.	.	.	.	2310	.	.	.	.	.	.	.	.	.	2320	.	.	.	.	.	.	.					.	.	2330									.	.	.	.	.	.	.	.	.	2340	.	.	.
Predicted Secondary structure																									.	.	.	.	.																									.	.	.	.				.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.																									.	.	.	.				.	.	.	.	.	.	.	.
Query Sequence		E	E	A	L	R	E	F	S	M	M	F	K	H	F	D	K	E	K	T	G	R	L	D	.	.	.	.	.	H	Q	Q	F	K	S	C	L	R	A	L	G	Y	D	L	P	M	V	D	E	G	Q	P	E	.	.	.	.	P	E	F	.	.	.	.	.	.	.	.	Q	R	I	L	D	I	V	D	P	N	R	D	G
Query Conservation																									.	.	.	.	.																									.	.	.	.				.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.																									.	.	.	.				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	Q	L	M	V	F	Q	E	R	L	V	E	F	A	K	K	H	N	S	E	L	Q	A	S	P	E	F	R	S	K	F	M	H	M	C	S	S	I	G	I	D	P	L	S	L	F	D	R	D	K	H	L	F	T	V	N	D	F	Y	Y	E	V	C	L	K	V	I	E	I	C	R	Q	T	K	D	M	N	G	G
Template Known Secondary structure																				T	T	T	T	T	T																T							T	T	S	S	G	G	G	T	T																				T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		2344	.	.	.	.	.	2350	.	.	.	.	.	.	.	.	.	2360	.	.	.	.	.	.	.	.	.	2370	.	.	.	.	.	.	.	.	.	2380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	T	L	Q	E	Y	M	A	F	M	I	S	K	E	T	E	N	I	Q	S	S	E	E	I	E	M	A	F	R	A	L	S	K	E	F	R	P	Y
Query Conservation
Alig confidence													.	.							.																	.
Template Conservation													.	.							.																	.
Template Sequence		V	I	S	F	Q	E	L	E	K	V	H	.	.	F	R	K	L	N	V	.	G	L	D	D	L	E	K	S	I	D	M	L	K	S	L	E	.	C	F
Template Known Secondary structure											T	T	.	.	T	T	T	T	T		.													T	T	T		.
Template Predicted Secondary structure													.	.							.																	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D