Job Description Q21408 Confidence 100.00% Date Sat Apr 13 12:50:02 BST 2013 Rank 1 Aligned Residues 582 % Identity 30% Template c1sjjB_ PDB info PDB header:contractile protein Chain: B: PDB Molecule:actinin; PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-2 actinin Resolution 20.00 Å Model Dimensions (Å) X:139.925 Y:214.862 Z:134.331

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		1837	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	Q	A	F	L	G	D	V	E	E	E	E	A	W	M	N	E	K	Q	Q	I	L	G	S	D	N	F	G	E	N	M	A	G	V	Q	G	L	L	K	K	H	D	T	F	Q	V	D	L	E	L	H	K	Q	R	V	A	D	L	I	N	K	G	D	T	L	I	H	N	G	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	E	D	Y	E	K	L	A	S	D	L	L	E	W	I	R	R	T	I	P	W	L	E	N	R	A	P	E	N	T	M	Q	A	M	Q	Q	K	L	E	D	F	R	D	Y	R	R	L	H	K	P	P	K	V	Q	E	K	C	Q	L	E	I	N	F	N	T	L	Q	T	K	L	R	L	S	N	R	P	A	F	M	P
Template Known Secondary structure																														S	S																		T																						T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
				1906	.	.	.	1910	.	.	.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.	.	.	.	.	.	.	1940	.	.	.		.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.	.	1970	.	.		.	.	.	.	.	.	.	1980	.
Predicted Secondary structure		.	.																																							.																														.
Query SS confidence		.	.																																							.																														.
Query Sequence		.	.	N	H	H	A	P	H	I	K	Q	R	C	D	Q	L	R	A	R	L	I	E	I	E	S	M	A	E	G	R	L	A	K	L	R	D	N	S	A	Y	.	L	Q	F	M	W	K	C	D	V	V	E	S	W	I	A	E	K	E	Q	Q	V	R	S	E	D	F	G	R	D	.	L	S	S	V	Q	I	L	L	T
Query Conservation		.	.																																							.																														.
Alig confidence		.	.																																							.																														.
Template Conservation
Template Sequence		S	E	G	K	M	V	S	D	I	N	N	A	W	G	G	L	E	Q	A	E	K	G	Y	E	E	W	L	L	N	E	I	R	R	L	E	R	L	D	H	L	A	E	K	F	R	Q	K	A	S	I	H	E	S	W	T	D	G	K	E	A	M	L	Q	Q	K	D	Y	E	T	A	T	L	S	E	I	K	A	L	L	K
Template Known Secondary structure		S	S	T	T		T	T	T												T	T	T																																T	T	T	T						T	S		T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		1982	.	.	.	.	.	.	.	1990	.	.	.	.	.	.	.	.	.	2000	.	.	.	.	.	.	.	.	.	2010	.	.	.	.	.	.	.	.	.	2020	.	.	.	.	.	.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.	.	.	2050	.	.	.	.	.	.	.	.	.	2060	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	E	A	F	D	A	G	L	N	A	F	E	H	E	G	I	Q	R	I	T	E	L	K	D	Q	L	V	S	S	E	H	Q	Q	S	P	A	I	E	K	R	H	T	N	V	I	Q	R	W	Q	N	L	L	A	H	S	E	A	R	R	Q	K	L	L	K	M	Q	Q	Q	F	K	Q	I	E	E	L	Y	L	A	F
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		K	H	E	A	F	E	S	D	L	A	A	.	H	Q	D	R	V	E	Q	I	A	A	I	A	Q	E	L	N	E	L	D	Y	Y	D	S	P	S	V	N	A	R	C	Q	K	I	C	D	Q	W	D	N	L	G	A	L	T	Q	K	R	R	E	A	L	E	R	T	E	K	L	L	E	T	I	D	Q	L	Y	L	E	Y
Template Known Secondary structure											T	T	.																	T	T	T		T	T
Template Predicted Secondary structure													.
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
		2062	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.	.	.	.	.	.	.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.	2120	.	.	.	.	.								.	.	.	.	2130	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.
Query Sequence		A	K	K	A	S	T	F	N	S	W	F	E	N	A	E	E	D	L	T	D	P	V	R	C	N	S	L	E	E	I	R	A	L	R	D	A	H	G	E	F	Q	R	S	L	S	S	A	E	E	D	F	R	Q	L	Q	D	L	D	R	R	I	K	S	F	.	.	.	.	.	.	.	N	V	G	P	N	P	Y	T	W
Query Conservation																																																																		.	.	.	.	.	.	.
Alig confidence																																																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	R	A	A	P	F	N	N	W	M	E	G	A	M	E	D	L	Q	D	T	F	I	V	H	T	I	E	E	I	Q	G	L	T	T	A	H	E	Q	F	K	A	T	L	P	D	A	D	K	E	R	Q	A	I	L	G	I	H	N	E	V	S	K	I	V	Q	T	Y	H	V	N	M	A	G	T	N	P	Y	T	T
Template Known Secondary structure					T	T	T	T	T										T	T						S	S																	T																								T	T	T			S		S			S	S		S
Template Predicted Secondary structure
Template SS confidence
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
		2135	.	.	.	.	2140	.	.	.	.	.	.	.	.	.	2150	.	.	.	.	.	.	.	.	.	2160	.	.	.	.	.	.	.	.	.	2170	.	.	.	.	.	.	.	.	.	2180	.	.	.	.	.	.	.	.	.	2190	.	.	.	.	.	.					.	.	.	2200	.	.	.	.	.	.	.	.	.	2210
Predicted Secondary structure																																																																.	.	.	.
Query SS confidence																																																																.	.	.	.
Query Sequence		F	T	M	D	A	L	E	D	T	W	R	N	L	Q	R	I	I	K	E	R	E	Q	E	L	A	R	E	H	Q	R	Q	E	E	N	D	K	L	R	R	E	F	A	K	L	A	N	A	F	H	A	W	L	T	N	T	R	Q	E	M	M	E	A	.	.	.	.	G	G	T	L	E	E	Q	L	D	A	V	E	R	K
Query Conservation																																																																.	.	.	.
Alig confidence																																																																.	.	.	.
Template Conservation
Template Sequence		I	T	P	Q	E	I	N	G	K	W	E	H	V	R	Q	L	V	P	R	R	D	Q	A	L	M	E	E	H	A	R	Q	Q	Q	N	E	R	L	R	K	Q	F	G	A	Q	A	N	V	I	G	P	W	I	Q	T	K	M	E	E	I	G	R	I	S	I	E	M	H	G	T	L	E	D	Q	L	N	H	L	R	Q	Y
Template Known Secondary structure																														T	T																													T	T	S	S	T	T		S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.
		2211	.	.	.	.	.	.	.	.	2220	.	.	.	.	.	.	.	.	.	2230	.	.	.	.	.	.	.	.	.	2240	.	.	.	.	.	.	.	.	.	2250	.	.	.	.	.	.	.	.	.	2260	.	.	.	.	.	.	.	.	.	2270	.	.	.	.	.	.	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	E	I	K	A	N	K	G	Q	L	R	Q	I	E	E	K	G	A	M	L	E	R	N	L	I	L	D	N	R	Y	T	E	H	S	T	V	G	I	A	Q	A	W	D	Q	L	D	Q	L	A	M	R	M	Q	H	N	L	E	Q	Q	I	Q	A	R	N	Q	S	G	V	S	E	E	A	L	R	E	F	S	M	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	S	I	V	N	Y	K	P	K	I	D	Q	L	E	G	D	H	Q	Q	I	Q	E	A	L	I	F	D	N	K	H	T	N	Y	T	M	E	H	I	R	V	G	W	E	Q	L	L	T	T	I	A	R	T	I	N	E	V	E	N	Q	I	L	T	R	D	A	K	G	I	S	Q	E	Q	M	N	E	F	R	A	S
Template Known Secondary structure									T															T	T	T					S	S		S																												T	T			T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		676	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.
		2291	.	.	.	.	.	.	.	.	2300	.	.	.	.	.	.	.	.	.	2310	.	.	.	.	.	.	.	.	.	2320	.	.	.	.	.	.	.	.	.	2330	.	.	.	.	.	.	.	.	.	2340	.	.	.	.	.	.	.	.	.	2350	.	.	.	.	.	.	.	.	.	2360	.	.	.	.	.	.	.	.	.	2370
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	H	F	D	K	E	K	T	G	R	L	D	H	Q	Q	F	K	S	C	L	R	A	L	G	Y	D	L	P	M	V	D	E	G	Q	P	E	P	E	F	Q	R	I	L	D	I	V	D	P	N	R	D	G	Y	V	T	L	Q	E	Y	M	A	F	M	I	S	K	E	T	E	N	I	Q	S	S	E	E	I	E	M
Query Conservation
Alig confidence																															.	.	.	.	.	.	.																													.
Template Conservation																															.	.	.	.	.	.	.																													.
Template Sequence		F	N	H	F	D	R	K	K	T	G	M	M	D	C	E	D	F	R	A	C	L	I	S	M	G	Y	N	M	G	.	.	.	.	.	.	.	E	A	E	F	A	R	I	M	S	I	V	D	P	N	R	M	G	V	V	T	F	Q	A	F	I	D	F	M	.	S	R	E	T	A	D	T	D	T	A	D	Q	V	M	A
Template Known Secondary structure							S	S	S	S	S															T				S	.	.	.	.	.	.	.	T	T	T					G	G	G	T		S	S	S														.					T	T	S		T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.																													.
Template SS confidence
		756	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.								.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.		.	.	.	.	.	.	.	820	.	.	.	.	.	.	.
		2371	.	.	.	.	.	.	.	.	2380	.	.	.	.	.	.	.	.	.	2390	.	.	.	.	.	.	.	.	.	2400	.	.	.	.	.	.	.	.	.	2410	.	.	.	.	.	.	.	.	.	2420	.	.	.	.	.	.	.	.	.	2430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	R	A	L	S	K	E	F	R	P	Y	V	T	A	E	E	L	Y	A	N	L	T	P	E	Q	A	E	F	C	I	R	R	M	K	P	Y	M	D	A	I	S	G	R	S	I	Q	G	G	L	D	Y	E	Q	F	V	H	A	L	F	Q
Query Conservation
Alig confidence							.																																			.	.	.
Template Conservation							.																																			.	.	.
Template Sequence		S	F	K	I	L	.	A	G	D	K	N	Y	I	T	V	D	E	L	R	R	E	L	P	P	D	Q	A	E	Y	C	I	A	R	M	A	P	Y	N	G	R	.	.	.	D	A	V	P	G	A	L	D	Y	M	S	F	S	T	A	L	Y	G
Template Known Secondary structure							.		S	S		S											S		T	T	T						T	T	S					S	S	.	.	.				T	T				S					T	T	S
Template Predicted Secondary structure							.																																			.	.	.
Template SS confidence
		828	.	830	.	.		.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.				.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.