Job Description Q21408 Confidence 98.82% Date Sat Apr 13 12:50:02 BST 2013 Rank 93 Aligned Residues 142 % Identity 17% Template c1s1eA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:kv channel interacting protein 1; PDBTitle: crystal structure of kv channel-interacting protein 12 (kchip-1) Resolution 2.30 Å

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		2274	.	.	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290	.	.	.	.	.	.	.	.	.	2300	.	.	.	.	.	.	.	.	.	2310	.	.	.	.	.	.	.	.	.	2320	.	.	.	.	.	.	.	.	.	2330	.	.	.	.	.	.	.	.	.	2340	.	.	.	.	.	.	.	.	.	2350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	Q	S	G	V	S	E	E	A	L	R	E	F	S	M	M	F	K	H	F	D	K	E	K	T	G	R	L	D	H	Q	Q	F	K	S	C	L	R	A	L	G	Y	D	L	P	M	V	D	E	G	Q	P	E	P	E	F	Q	R	I	L	D	I	V	D	P	N	R	D	G	Y	V	T	L	Q	E	Y	M	A	F
Query Conservation
Alig confidence																									.	.																						.	.	.	.	.	.
Template Conservation																									.	.																						.	.	.	.	.	.
Template Sequence		E	A	Q	T	N	F	T	K	R	E	L	Q	V	L	Y	R	G	F	K	N	E	C	P	.	.	S	G	V	V	N	E	E	T	F	K	Q	I	Y	A	Q	F	F	P	H	G	D	.	.	.	.	.	.	A	S	T	Y	A	H	Y	L	F	N	A	F	D	T	T	Q	T	G	S	V	K	F	E	D	F	V	T	A
Template Known Secondary structure					S	S																		T	.	.	T	S		B											T	T		T	T	S		.	.	.	.	.	.														T	T		S	S		B
Template Predicted Secondary structure																									.	.																						.	.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.							.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		2354	.	.	.	.	.	2360	.	.	.	.	.	.	.	.	.	2370	.	.	.	.	.	.	.	.	.	2380	.	.	.	.	.	.	.	.	.																2390	.	.	.	.	.	.	.	.	.	2400	.	.	.	.	.	.	.	.	.	2410	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	S	K	E	T	E	N	I	Q	S	S	E	E	I	E	M	A	F	R	A	L	S	K	E	F	R	P	Y	V	T	A	E	E	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	L	T	P	E	Q	A	E	F	C	I	R	R	M	K	P	Y	M	D	A	I	S	G	R	S	I	Q	G
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation			.	.																																																																									.	.	.	.
Template Sequence		L	.	.	S	I	L	L	R	G	T	V	H	E	K	L	R	W	T	F	N	L	Y	D	I	N	K	D	G	Y	I	N	K	E	E	M	M	D	I	V	K	A	I	Y	D	M	M	G	K	Y	T	Y	P	V	L	K	E	D	T	P	R	Q	H	V	D	V	F	F	Q	K	M	D	K	N	K	D	.	.	.	.	G
Template Known Secondary structure			.	.																					T	T			S																			T	T				G	G	G		S	S	S														T	T		S	.	.	.	.	S
Template Predicted Secondary structure			.	.																																																																									.	.	.	.
Template SS confidence
		115			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.
		2419	2420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	D	Y	E	Q	F	V	H	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	T	L	D	E	F	L	E	S	C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D