Job Description Q21408 Confidence 22.97% Date Sat Apr 13 12:50:02 BST 2013 Rank 382 Aligned Residues 70 % Identity 17% Template c1ku2A_ PDB info PDB header:transcription Chain: A: PDB Molecule:sigma factor siga; PDBTitle: crystal structure of thermus aquaticus rna polymerase sigma2 subunit fragment containing regions 1.2 to 3.1 Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2334	.	.	.	.	.	2340	.	.	.	.	.	.	.	.	.	2350	.	.	.	.	.	.	.	.	.	2360	.	.																.	.	.	.	.	.	.	2370	.	.	.	.	.	.	.	.	.	2380	.	.	.	.	.	.	.	.	.	2390	.					.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Query Sequence		L	D	I	V	D	P	N	R	D	G	Y	V	T	L	Q	E	Y	M	A	F	M	I	S	K	E	T	E	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	S	E	E	I	E	M	A	F	R	A	L	S	K	E	F	R	P	Y	V	T	A	E	E	L	Y	A	N	.	.	.	.	L	T	P
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Alig confidence										.		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation										.		.
Template Sequence		V	E	K	F	E	Y	K	R	.	R	.	F	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I	N	R	A	I	A	D	Q	A	R	T	I	R	I	P	V	H	M	V	E	T	I	N	K	L	S	R	T	A	R	Q	L	Q	Q	E	L	G	R	E	P	S	Y	E	E	I	A	E	A	M	G	P	G	W	D	A
Template Known Secondary structure							G	G	G	.		.	S																			T	T	S																													T	S													S	S
Template Predicted Secondary structure										.		.
Template SS confidence
		239	240	.	.	.	.	.	.		.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		2395	.	.	.	.	2400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	A	E	F	C	I	R	R	M	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	V	E	E	T	L	K	I	A	Q
Template Known Secondary structure								G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D