20/04/2013 19:00:30 : INFO  : Run start: Sat Apr 20 19:00:30 BST 2013
20/04/2013 19:00:30 : INFO  : Initialised job
20/04/2013 19:00:30 : INFO  : Initialised job:
Sequence
>batch____
MADSNDTHAPPEPVLEVPPPQEIRILETADDIHQRRQEVLGHYSIFKDHSQTKRDRLEEA
RQFQYFKRDADELNVWILEKLQTAQEENFRDPSNLQAKIQKHEAFEAEVQAHAKTIANLD
KTGNAMIQHNHFASEHIKKRLEELHALWDKLFFKLKDKGIKLQQALKLLHFIRQCDEILY
WIREKETYVTAEDMGMDLEHVEILQRKFDDFLKELGNHQYRINEINQAADKLVEEGHSEH
DQIYKKRDDVNDAWHRLNTLAATRKEGLFGAHQVQRFNRDADETLAWIGEKDLALSSDDY
GRDLNNVQALQRKHEGTERDLAALEGKMLQLEKEAHKLAETHPDRAEAIHQKNDDTKAAW
NALKEKAQHRKDGLERSFQLHRFLADYRDLISWIGDMKAVIGADELAKDVAGAEALLESH
QEHKGEIDARADSFNQTASAGQKLVEMGIPESPEVQEKLEKLDHEKSSLLGLWEERRILY
EQCMDLQLFYRDTEQAETWMNKQEAFLANTDLGDSLDSVEHLIKKHEDFEKSLAAQEEKI
NALDEFATKLIQGQHYAADDVAERRQALLDRRRRLLDRARQRGNALKESYKRQTFDRDCD
EMVSWITEKLSTARDDSYLDPTNIRGKLQKHINFEQELKANENRLDDIRSTGEQIIDSGH
FAADHIGDRLRQVNNLWNELVDATNKKGAKLREAGNEQQFNRNIEDVEAWLSELEGQVAS
EDYGKDLVSVQNLQKKIGLIESDFNAHNDRVDGIKQLAQQFQEEEHFNAPVIVRKQENLQ
QRYNALRDPLEKRKRKLGESHQGNQLFRDIEDELAWIREKEQVAGSTNRGRDLIGVQNLI
KKQQALIAEIANHDSQIESVSSAANDMIQQGHFLAPEIRDKLAQLRDNWRILKSKAEKRR
TDLDDSLQAHQYLSDANEADAWMSEKEPIVGSTDYGKDEDSAEALLKKHRALLSDLEAFK
GTIEDLRKQASQCKYQEQPMGQLGRDCVLALYDYQEKSPREVSMKKGDVLTLLNASNRDW
WKVEVNDRQGFVPAAYVKRIEPGTAQQHAQQQVNSIGGKQSEIEDKYQRLMMLGETRKRK
LEEACKGYQLLREANDLAEWIKSRTNMAEEAVAAQQEIGTDLEQVEVLQKKFDDFKGDLK
ANEVRLQEMNQIATALTSVGQTETAVRIRQQIEDLNARWRALEEQTEQREQQLGSAHEVQ
RFHRDVDETRDWIQEKDDALDSEDFGRDLRSVQALQRKHEGVERDLAALGDKIKSLDEKA
NRLRQSHPEAAEQIYDLQRELNEQWNRLTSKANNRKEKLLDSYDYQRFLSDYRDLMQWIA
SMNQLVSSQELANDVTGAEALLERHQEYRTEIDSRAATFQAFDQFGNQLLNSHHYAAGDI
ENRLQGVNEARKGLEDAWVARRNILDQCLELQLFYRDCEQADTWMSAREAFLAQEDPSGD
NVESLIKKHEDFDKAINTQEEKIKGLKLFAESLIKNNHYDSPAVTRKRDQILDRWNGLKE
ALIQKRFKLGESQTLQQFSRDADEIENWMTEKFQIAQEENYRDPTNIQQKHQKQQAFEAE
LHANSDRIAAIIQAGNNLIENAKCGGGEAAVSARLKALNDQWDLLVKTTTEKSYRLKEAN
KQKSFMAAVKDLEFWLGEVEILLQSEDYGKDLASVENLLKKHSLLEADIVAHQDRVGEMN
EQADSLLENDQFQGQQIAERRKLIADRYDGVKKMATDRRDKLSKALNVHQFFRDIDDEES
WIKEKKLLVSSDDYGRDLPGVQNLRRKHRRIDTELASHEPQVSLVKLKGEELLRSAAEAG
VGEDQIKKRMEDLEQSWGQIRDLTGNRHQRLDESEAFQAFLGDVEEEEAWMNEKQQILGS
DNFGENMAGVQGLLKKHDTFQVDLELHKQRVADLINKGDTLIHNGNHHAPHIKQRCDQLR
ARLIEIESMAEGRLAKLRDNSAYLQFMWKCDVVESWIAEKEQQVRSEDFGRDLSSVQILL
TKQEAFDAGLNAFEHEGIQRITELKDQLVSSEHQQSPAIEKRHTNVIQRWQNLLAHSEAR
RQKLLKMQQQFKQIEELYLAFAKKASTFNSWFENAEEDLTDPVRCNSLEEIRALRDAHGE
FQRSLSSAEEDFRQLQDLDRRIKSFNVGPNPYTWFTMDALEDTWRNLQRIIKEREQELAR
EHQRQEENDKLRREFAKLANAFHAWLTNTRQEMMEAGGTLEEQLDAVERKAKEIKANKGQ
LRQIEEKGAMLERNLILDNRYTEHSTVGIAQAWDQLDQLAMRMQHNLEQQIQARNQSGVS
EEALREFSMMFKHFDKEKTGRLDHQQFKSCLRALGYDLPMVDEGQPEPEFQRILDIVDPN
RDGYVTLQEYMAFMISKETENIQSSEEIEMAFRALSKEFRPYVTAEELYANLTPEQAEFC
IRRMKPYMDAISGRSIQGGLDYEQFVHALFQS

20/04/2013 19:00:30 : INFO  : Checked sequence
20/04/2013 19:00:30 : INFO  : Finding homologues with PSI-BLAST
20/04/2013 19:00:30 : INFO  : PSI-BLAST 3 iterations
20/04/2013 19:12:42 : INFO  : PSI-BLAST 5 iterations
20/04/2013 19:32:45 : INFO  : Finished PSI-BLAST
20/04/2013 19:32:45 : INFO  : Running Buildali to generate a3m file
20/04/2013 23:13:20 : INFO  : Converting to HMM
20/04/2013 23:16:28 : INFO  : Calibrating HMM
20/04/2013 23:17:27 : INFO  : Searching HMM database
21/04/2013 00:09:42 : INFO  : Finished buildali
21/04/2013 00:09:42 : INFO  : Predicting secondary structure
21/04/2013 00:09:45 : INFO  : Predicted secondary structure (PSI-Pred)
21/04/2013 00:09:45 : INFO  : Predicting Disordered regions
21/04/2013 00:09:45 : INFO  : Predicted Disorder (Disopred)
21/04/2013 00:09:45 : INFO  : Running memsat_svm check
21/04/2013 00:10:45 : INFO  : Globular protein
21/04/2013 00:10:45 : INFO  : Predicted Transmembrane (memsat_svm) ID '57539a1906360a68'
21/04/2013 00:10:45 : INFO  : Initialising fold library search
21/04/2013 00:10:45 : INFO  : Initialised search input
21/04/2013 00:10:45 : INFO  : Building Ensemble models
21/04/2013 00:10:45 : INFO  : Building hh.c1sjjB_.model.1.pdb
21/04/2013 00:10:47 : INFO  : Building hh.c3edvB_.model.2.pdb
21/04/2013 00:10:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/57539a1906360a68/hh.c3edvB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/57539a1906360a68/c3edvB_.3.pdb
21/04/2013 00:10:47 : INFO  : Building hh.c1u4qB_.model.3.pdb
21/04/2013 00:10:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/57539a1906360a68/hh.c1u4qB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/57539a1906360a68/c1u4qB_.4.pdb
21/04/2013 00:10:47 : INFO  : Building hh.c3kbtA_.model.4.pdb
21/04/2013 00:10:48 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/57539a1906360a68/hh.c3kbtA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/57539a1906360a68/c3kbtA_.5.pdb
21/04/2013 00:10:48 : INFO  : Building hh.c3pe0B_.model.5.pdb
21/04/2013 00:10:48 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/57539a1906360a68/hh.c3pe0B_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/57539a1906360a68/c3pe0B_.12.pdb
21/04/2013 00:10:48 : INFO  : Building hh.c3f31B_.model.6.pdb
21/04/2013 00:10:49 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/57539a1906360a68/hh.c3f31B_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/57539a1906360a68/c3f31B_.52.pdb
21/04/2013 00:10:49 : INFO  : Building hh.c3r6nA_.model.7.pdb
21/04/2013 00:10:49 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/57539a1906360a68/hh.c3r6nA_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/57539a1906360a68/c3r6nA_.170.pdb
21/04/2013 00:10:49 : INFO  : Building c1sjjB_.1.pdb
21/04/2013 00:10:50 : INFO  : Building c1hciB_.2.pdb
21/04/2013 00:10:51 : INFO  : Building c3edvB_.3.pdb
21/04/2013 00:10:52 : INFO  : Building c1u4qB_.4.pdb
21/04/2013 00:10:52 : INFO  : Building c3kbtA_.5.pdb
21/04/2013 00:10:53 : INFO  : Building d1h8ba_.6.pdb
21/04/2013 00:10:53 : INFO  : Building c1cunC_.7.pdb
21/04/2013 00:10:53 : INFO  : Building c1u5pA_.8.pdb
21/04/2013 00:10:54 : INFO  : Building c1s35A_.9.pdb
21/04/2013 00:10:54 : INFO  : Building c3evrA_.10.pdb
21/04/2013 00:10:54 : INFO  : Building c3fb2B_.11.pdb
21/04/2013 00:10:55 : INFO  : Building c3pe0B_.12.pdb
21/04/2013 00:10:55 : INFO  : Building c1quuA_.13.pdb
21/04/2013 00:10:56 : INFO  : Building c3ek7A_.14.pdb
21/04/2013 00:10:56 : INFO  : Building c3u0kA_.15.pdb
21/04/2013 00:10:57 : INFO  : Building d1ij5a_.16.pdb
21/04/2013 00:10:58 : INFO  : Building c3pdyB_.17.pdb
21/04/2013 00:10:58 : INFO  : Building c3sibA_.18.pdb
21/04/2013 00:10:58 : INFO  : Building c3f57B_.19.pdb
21/04/2013 00:10:59 : INFO  : Building c3lbxB_.20.pdb
21/04/2013 00:11:13 : INFO  : Finished HH model building
21/04/2013 00:11:13 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
21/04/2013 00:11:21 : INFO  : html domain output complete ID '57539a1906360a68'
21/04/2013 00:11:21 : WARN  : Failed to run assembler on model
21/04/2013 00:11:21 : WARN  : Failed to run assembler on model
21/04/2013 00:11:22 : WARN  : Failed to run assembler on model
21/04/2013 00:11:22 : WARN  : Failed to run assembler on model
21/04/2013 00:11:23 : WARN  : Failed to run assembler on model
21/04/2013 00:11:23 : WARN  : Failed to run assembler on model
21/04/2013 00:11:24 : WARN  : Failed to run assembler on model
21/04/2013 00:11:24 : WARN  : Failed to run assembler on model
21/04/2013 00:11:24 : WARN  : Failed to run assembler on model
21/04/2013 00:11:24 : WARN  : Failed to run assembler on model
21/04/2013 00:11:25 : WARN  : Failed to run assembler on model
21/04/2013 00:11:25 : WARN  : Failed to run assembler on model
21/04/2013 00:11:25 : WARN  : Failed to run assembler on model
21/04/2013 00:11:25 : WARN  : Failed to run assembler on model
21/04/2013 00:11:26 : WARN  : Failed to run assembler on model
21/04/2013 00:11:26 : WARN  : Failed to run assembler on model
21/04/2013 00:11:26 : WARN  : Failed to run assembler on model
21/04/2013 00:11:26 : WARN  : Failed to run assembler on model
21/04/2013 00:11:27 : WARN  : Failed to run assembler on model
21/04/2013 00:11:27 : WARN  : Failed to run assembler on model
21/04/2013 00:11:27 : WARN  : Failed to run assembler on model
21/04/2013 00:11:28 : WARN  : Failed to run assembler on model
21/04/2013 00:11:28 : INFO  : Run end  : Sun Apr 21 00:11:28 BST 2013
