Phyre 2 alignment of Q21408 with c2kq6A_

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Job Description | Q21408
Confidence | 91.23% | Date | Sat Apr 13 12:50:02 BST 2013
Rank | 271 | Aligned Residues | 46
% Identity | 22% | Template | c2kq6A_
PDB info | PDB header:transport protein | Chain: A: PDB Molecule:polycystin-2; | PDBTitle: the structure of the ef-hand domain of polycystin-2 suggests a2 mechanism for ca2+-dependent regulation of polycystin-2 channel3 activity
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 2299 | 2300 | . | . | . | . | . | . | . | . | . | 2310 | . | . | . | . | . | . | . | . | . | 2320 | . | . | . | . | . | . | . | . | . | 2330 | . | . | . | . | . | . | . | . | . | 2340 | . | . | . | . | . | . | . | . | . | 2350 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | T | G | R | L | D | H | Q | Q | F | K | S | C | L | R | A | L | G | Y | D | L | P | M | V | D | E | G | Q | P | E | P | E | F | Q | R | I | L | D | I | V | D | P | N | R | D | G | Y | V | T | L | Q | E | Y | M | A | F
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | G | K | L | N | F | D | E | L | R | Q | D | L | K | G | K | G | H | . | . | . | . | . | . | . | . | . | T | D | A | E | I | E | A | I | F | T | K | Y | D | Q | D | G | D | Q | E | L | T | E | H | E | H | Q | Q | M
Template Known Secondary structure |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S | S | S | S |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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