Phyre 2 alignment of Q21408 with c4egqD_

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Job Description | Q21408
Confidence | 21.55% | Date | Sat Apr 13 12:50:02 BST 2013
Rank | 397 | Aligned Residues | 42
% Identity | 19% | Template | c4egqD_
PDB info | PDB header:ligase | Chain: D: PDB Molecule:d-alanine--d-alanine ligase; | PDBTitle: crystal structure of d-alanine-d-alanine ligase b from burkholderia2 pseudomallei
Resolution | 2.20 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 2375 | . | . | . | . | 2380 | . | . | . | . | . | . | . | . | . | 2390 | . | . | . | . | . | . | . | . | . | 2400 | . | . | . | . | . | . | . | . | . | 2410 | . | . | . | . | . | . | . | . | . | 2420 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | S | K | E | F | R | P | Y | V | T | A | E | E | L | Y | A | N | L | T | P | E | Q | A | E | F | C | I | R | R | M | K | P | Y | M | D | A | I | S | G | R | S | I | Q | G | G | L | D | Y | E | Q | F | V | H | A | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | D | A | A | G | N | P | Y | F | L | E | V | N | T | A | P | G | M | T | D | H | S | L | P | P | K | A | A | R | A | V | . | . | . | . | . | . | . | . | . | . | . | . | . | G | I | G | Y | S | E | L | V | V | K | V
Template Known Secondary structure |  |  |  | T | T |  |  |  |  |  |  |  |  |  | S | S |  |  |  | S | T | T | S |  |  |  |  |  |  |  |  | T | . | . | . | . | . | . | . | . | . | . | . | . | . | T |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 265 | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | 300 | . | . | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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