Phyre 2 alignment of Q21408 with d1q08a_

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Job Description | Q21408
Confidence | 40.42% | Date | Sat Apr 13 12:50:02 BST 2013
Rank | 316 | Aligned Residues | 35
% Identity | 20% | Template | d1q08a_
SCOP info | Putative DNA-binding domain | Putative DNA-binding domain | DNA-binding N-terminal domain of transcription activators
Resolution | 1.90

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 2302 | . | . | . | . | . | . | . | 2310 | . | . | . | . | . | . | . | . | . | 2320 | . | . | . | . | . | . | . | . | . | 2330 | . | . | . | . | . | . | . | . | . | 2340 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | D | H | Q | Q | F | K | S | C | L | R | A | L | G | Y | D | L | P | M | V | D | E | G | Q | P | E | P | E | F | Q | R | I | L | D | I | V | D | P | N | R | D | G | Y | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | Q | R | L | K | F | I | R | H | A | R | Q | L | G | . | . | F | S | . | . | . | . | . | . | . | L | E | S | I | R | E | L | L | S | I | R | I | D | P | E | H | H | T | C
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 45 | . | . | . | . | 50 | . | . | . | . | . | . | . | . |  |  | . | 60 |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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