Job Description O01498 Confidence 97.29% Date Fri May 3 21:45:00 BST 2013 Rank 238 Aligned Residues 131 % Identity 12% Template c3d9oB_ PDB info PDB header:transcription Chain: B: PDB Molecule:rna-binding protein 16; PDBTitle: snapshots of the rna processing factor scaf8 bound to different2 phosphorylated forms of the carboxy-terminal domain of rna-polymerase3 ii Resolution 2.00 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		M	S	A	Y	E	D	L	L	G	K	I	T	A	P	T	I	T	V	E	N	W	E	G	I	L	A	F	C	D	M	I	N	N	D	F	E	G	S	K	T	G	I	K	S	L	R	K	R	L	N	N	R	D	P	H	V	V	L	L	A	I	S	V	L	D	S	C	W	A	N	C	E	E	R	F	R	K	E	.	.
Query Conservation																																																																																.	.
Alig confidence															.																																																																	.	.
Template Conservation															.
Template Sequence		V	K	T	F	N	S	E	L	Y	S	L	X	D	.	X	K	P	P	I	S	K	A	K	X	T	Q	I	T	K	A	A	I	K	A	I	K	F	Y	K	H	V	V	Q	S	V	E	K	F	I	Q	K	C	K	P	E	Y	K	V	P	G	L	Y	V	I	D	S	I	V	R	Q	S	R	H	Q	F	G	Q	E	K	D
Template Known Secondary structure											G	G	G	G	.	S		S	S																T	G	G	G															S		G	G	G																					T	T	T
Template Predicted Secondary structure															.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		V	S	S	A	Q	F	I	N	E	L	K	A	L	C	.	.	.	T	S	S	Q	R	Q	V	A	E	K	M	R	L	T	V	Q	K	W	V	D	T	E	C	K	T	E	Q	S	L	S	L	I	V	T	L	H	K	N	L	V
Query Conservation																.	.	.
Alig confidence																.	.	.
Template Conservation
Template Sequence		V	F	A	P	R	F	S	N	N	I	I	S	T	F	Q	N	L	Y	R	C	P	G	D	D	K	S	K	I	V	R	V	L	N	L	W	Q	K	N	N	V	F	K	S	E	I	I	Q	P	L	L	D	X	A	A	A	L	E
Template Known Secondary structure		S								T									T	T	S		G	G	G														T	T	S	S																T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D