Job Description O01498 Confidence 97.51% Date Fri May 3 21:45:00 BST 2013 Rank 236 Aligned Residues 131 % Identity 11% Template c3cljA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:protein nrd1; PDBTitle: structure of the rna polymerase ii ctd-interacting domain of nrd1 Resolution 2.10 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		F	P	M	S	A	Y	E	D	L	L	G	K	I	T	A	P	T	I	T	V	E	N	W	E	G	I	L	A	F	C	D	M	I	N	N	D	F	E	G	S	K	T	G	I	K	S	L	R	K	R	L	N	N	R	D	P	H	V	V	L	L	A	I	S	V	L	D	S	C	W	A	N	C	E	E	R	F	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																			.																																																												.	.	.
Template Conservation																			.
Template Sequence		M	D	F	Q	N	F	V	A	T	L	E	S	F	K	D	L	K	.	S	G	I	S	G	S	R	I	K	K	L	T	T	Y	A	L	D	H	I	D	I	E	S	K	I	I	S	L	I	I	D	Y	S	R	L	C	P	D	S	H	K	L	G	S	L	Y	I	I	D	S	I	G	R	A	Y	L	D	E	T	R	S	N
Template Known Secondary structure													G	G	G	G		S	.	S	S																T	G	G	G															S		G	G	G																					T
Template Predicted Secondary structure																			.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
											84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	R	K	E	V	S	S	A	Q	F	I	N	E	L	K	A	L	C	T	S	S	Q	R	Q	V	A	E	K	M	R	L	T	V	Q	K	W	V	D	T	E	C	K	T	E	Q	S	L	S	L	I	V	T	L	H	K	N
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	K	P	G	T	C	A	H	A	I	N	T	L	G	E	V	I	Q	E	L	L	S	D	A	I	A	K	S	N	Q	D	H	K	E	K	I	R	M	L	L	D	I	W	D	R	S	G	L	F	Q	K	S	Y	L	N	A	I	R	S	K	C	F	A
Template Known Secondary structure				S	T	T	S																							S																			T	T	T	T	T	S			T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D