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Job DescriptionQ23554
Confidence100.00%DateFri May 3 21:43:27 BST 2013
Rank168Aligned Residues250
% Identity22%Templatec4dc2A_
PDB info PDB header:transferase/transferase substrateChain: A: PDB Molecule:protein kinase c iota type; PDBTitle: structure of pkc in complex with a substrate peptide from par-3
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   133......140.........150.........160.........170.........180.........190...... ...200.........210.
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Query Sequence  LRHDQIKLGKMLGEGAFGGVYKAAFYCKGEKRMVAVKVNKGNEKISTRAMIEDVCKEARIMRQY. QHPNVVCFFGVCVEK
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLV. . RLKKTDRIYAMRVVKKELVNIDW. . . . . VQTEKHVFEQASNHPFLVGLHSCFQTE
Template Known Secondary structure 

GGG
SS..TTTTGGGT


.....TT
TTB


S
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   239240.........250.........260. ........270.........280.... .....290.........300.........310.
 
   212.......220.........230.........240.........250.........260.........270. ........280.........290
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Query Sequence  EPIMLVMELASQGALDSFLKNEKNNVSLRDKLKYSFDASKGLEYLHQHGCIHRDVAARNF. LMHKNVVKITDFGLSKQLS
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Template Sequence  SRLFFVIEYVNGGDLMFHMQRQRK. LPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL
Template Known Secondary structure  S

TT
BSS.

TT
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GGG
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TT
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   316...320.........330......... 340.........350.........360.........370.........380.........390....
 
   291........300.........310.........320.........330.........340........ .350.........360........
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Query Sequence  DLAHKYKLKDIQAKLPIRWLAPEVIVTATYTFKSDVYSFGILLWEIFMDGAIPYPGMK. . LAEVKQKVKNGYRMDAPDRM
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Template Sequence  RPGDTTSTFCGT. . . . PNYIAPEILRGEDYGFSVDWWALGVLMFEMMA. GRSPFDIVGSNTEDYLFQVILEKQIRIPRSL
Template Known Secondary structure 
TT

B



S
....GGG

TT

B
T.SS
SSTTTT








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   395....400...... ...410.........420.........430........ .440.........450.........460.........
 
   369370.........380......... 390......
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Query Sequence  PAFVRNIMISQCWPQNPEDRG. . . . . . NMNEIRL
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Template Sequence  SVKAASV. LKSFLNKDPKERLGCHPQTGFADIQG
Template Known Secondary structure 
.T
S
TTTSTT
STTT
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   476...480.. .......490.........500........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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