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Job DescriptionQ23554
Confidence100.00%DateFri May 3 21:43:27 BST 2013
Rank139Aligned Residues252
% Identity23%Templatec1zrzA_
PDB info PDB header:transferaseChain: A: PDB Molecule:protein kinase c, iota; PDBTitle: crystal structure of the catalytic domain of atypical2 protein kinase c-iota
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   133......140.........150.........160.........170.........180.........190..... ....200.........210.
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Query Sequence  LRHDQIKLGKMLGEGAFGGVYKAAFYCKGEKRMVAVKVNKGNEKISTRAMIEDVCKEARIMRQ. YQHPNVVCFFGVCVEK
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLV. . RLKKTDRIYAMKVVKKE. LVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE
Template Known Secondary structure 

STT
SS..TTT

GG.G

STTTTTTTSSTTB


B
S
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   240.........250.........260.. .......270......... 280.........290.........300.........310......
 
   212.......220.........230.........240.........250.........260.........270. ........280.........290
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Query Sequence  EPIMLVMELASQGALDSFLKNEKNNVSLRDKLKYSFDASKGLEYLHQHGCIHRDVAARNF. LMHKNVVKITDFGLSKQLS
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Template Sequence  SRLFFVIEYVNGGDLMFHMQRQRK. LPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL
Template Known Secondary structure  S


S
BTTSS.

TT
B




GGG
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TT
B


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   317..320.........330.........340 .........350.........360.........370.........380.........390.....
 
   291........300.........310.........320.........330.........340.........350.........360.........370
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Query Sequence  DLAHKYKLKDIQAKLPIRWLAPEVIVTATYTFKSDVYSFGILLWEIFMDGAIPYPGMKLAEVKQKVKNGYRMDAPDRMPA
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Template Sequence  RPGDTTSFCGTPN. . . . . YIAPEILRGEDYGFSVDWWALGVLMFEMMA. GRSPFDQNTEDYLFQVILE. KQIRIPRSMSV
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TT

B


S
GG.....G

TT

B
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TTS
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   396...400........ .410.........420.........430........ .440.........450....... ..460........
 
   371........380.........390 ......
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Query Sequence  FVRNIMISQCWPQNPEDRGN. . . . . . MNEIRL
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Template Sequence  KAASV. LKSFLNKDPKERLGCLPQTGFADIQG
Template Known Secondary structure  .T
SSSTTSTTTSTTT
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   479480... ......490.........500.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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