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Job DescriptionQ23554
Confidence100.00%DateFri May 3 21:43:27 BST 2013
Rank116Aligned Residues248
% Identity25%Templatec1kobB_
PDB info PDB header:kinaseChain: B: PDB Molecule:twitchin; PDBTitle: twitchin kinase fragment (aplysia), autoregulated protein2 kinase domain
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   136...140.........150.........160.........170.........180.........190.........200.........210.....
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Query Sequence  DQIKLGKMLGEGAFGGVYKAAFYCKGEKRMVAVKVNKGNEKISTRAMIEDVCKEARIMRQYQHPNVVCFFGVCVEKEPIM
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Template Sequence  DYYDILEELGSGAFGVVHRC. . VEKATGRVFVAKFI. . . . NTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMV
Template Known Secondary structure  GTTT..TTT

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STT

STTB


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   51........60.........70 .........80.... .....90.........100.........110.........120....
 
   216...220.........230.........240.........250.........260.........270.... .....280.........290..
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Query Sequence  LVMELASQGALDSFLKNEKNNVSLRDKLKYSFDASKGLEYLHQHGCIHRDVAARNFLMH. . . KNVVKITDFGLSKQLSDL
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Template Sequence  LILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD
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BTT
TT



TTT




GGGSSTT
S



TT


TT
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   125....130.........140.........150.........160.........170.........180.........190.........200....
 
   293......300.........310.........320.........330.........340.........350.........360....... ..
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Query Sequence  AHKYKLKDIQAKLPIRWLAPEVIVTATYTFKSDVYSFGILLWEIFMDGAIPYPGMKLAEVKQKVKNGYRMDAPDR. . . MP
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Template Sequence  EIVKVTTATAE. . . . . FAAPEIVDREPVGFYTDMWAIGVLGYVLLS. GLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVS
Template Known Secondary structure  S
TTGG.....G

TT

B
.S

TT

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TTTTTTS
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   205....210..... ....220.........230.........240..... ....250.........260.........270........
 
   370.........380.........390......
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Query Sequence  AFVRNIMISQCWPQNPEDRGNMNEIRL
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Template Sequence  PEAKDF. IKNLLQKEPRKRLTVHDALE
Template Known Secondary structure  .TTS
SSGGGS

TT
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   279280.... .....290.........300....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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