Job Description Q8I4E2 Confidence 100.00% Date Sat Apr 13 13:13:52 BST 2013 Rank 3 Aligned Residues 341 % Identity 37% Template c4akvB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:sorting nexin-33; PDBTitle: crystal structure of human sorting nexin 33 (snx33) Resolution 2.65 Å Model Dimensions (Å) X:70.971 Y:95.045 Z:60.297

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		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	R	H	E	V	V	M	N	N	G	I	I	Q	W	K	P	I	Q	Q	Y	Y	T	C	I	V	D	K	P	K	K	E	S	K	L	K	G	L	K	S	F	I	A	Y	S	I	T	S	S	L	T	N	I	Q	R	Q	V	S	R	R	Y	K	H	F	D	W	L	H	E	Q	L	S	A	K	Y	V	L	I	P	I
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.													.	.
Template Sequence		Q	S	M	Y	S	I	E	M	G	P	R	G	P	Q	W	K	A	N	P	H	P	F	A	C	S	V	E	D	S	.	.	.	.	.	.	.	.	.	.	.	Y	I	S	Y	K	L	T	P	T	H	A	A	.	.	S	P	V	Y	R	R	Y	K	H	F	D	W	L	Y	N	R	L	L	H	K	F	T	V	I	S	V
Template Known Secondary structure											T	T	S	S						S	S										.	.	.	.	.	.	.	.	.	.	.									T	T		S	.	.	S																					S	S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.													.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.												.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	L	P	E	K	Q	V	A	G	R	Y	E	E	D	L	I	D	H	R	K	H	I	L	Q	L	W	V	N	K	I	C	R	H	P	V	L	S	Q	S	E	V	W	L	H	F	I	S	C	T	D	E	K	D	W	K	N	G	K	R	R	A	E	K	D	E	Y	I	G	G	A	F	L	N	C	I	T	V	P	H
Query Conservation
Alig confidence									.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.
Template Sequence		P	H	L	P	E	K	Q	.	.	.	.	.	.	.	D	F	I	E	K	R	K	R	R	L	I	L	W	M	D	H	M	T	S	H	P	V	L	S	Q	Y	E	G	F	Q	H	F	L	S	C	L	D	D	K	Q	W	K	M	G	K	R	R	A	E	K	D	E	M	V	G	A	S	F	L	L	T	F	Q	I	P	T
Template Known Secondary structure									.	.	.	.	.	.	.																			T	S	T	T	G	G	G																							T	S	S	S	S	S	S								S				S
Template Predicted Secondary structure									.	.	.	.	.	.	.
Template SS confidence
		287	.	.	290	.	.	.								.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	L	D	P	N	N	V	D	M	Q	V	E	R	F	Q	R	S	V	K	T	S	E	E	A	M	R	V	M	Q	E	R	M	N	M	F	Q	K	V	F	A	G	P	V	K	Q	N	W	Q	K	M	G	S	A	F	K	T	L	Q	Q	S	F	E	I	D	E	T	V	A	S	R	R	L	T	E	A	L	A	Y	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	H	Q	D	L	Q	D	V	E	D	R	V	D	T	F	K	A	F	S	K	K	M	D	D	S	V	L	Q	L	S	T	V	A	S	E	L	V	R	K	H	V	G	G	F	R	K	E	F	Q	K	L	G	S	A	F	Q	A	I	S	H	S	F	Q	M	D	P	P	F	C	S	E	A	L	N	S	A	I	S	H	T
Template Known Secondary structure		S	S	S																																							T																				T	T	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.						.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		A	S	E	Y	H	E	I	G	Q	V	F	D	A	H	T	K	N	D	M	E	P	V	L	E	N	L	Y	S	Y	K	G	T	V	Q	N	V	P	D	I	I	Q	V	H	K	Q	A	V	Q	K	F	R	D	S	.	.	.	.	.	E	G	R	L	S	S	A	E	A	E	K	M	K	Q	R	I	D	A	M	S	Y	T
Query Conservation																																																							.	.	.	.	.
Alig confidence																																																							.	.	.	.	.
Template Conservation
Template Sequence		G	R	T	Y	E	A	I	G	E	M	F	A	E	Q	P	K	N	D	L	F	Q	M	L	D	T	L	S	L	Y	Q	G	L	L	S	N	F	P	D	I	I	H	L	Q	K	G	A	F	A	K	V	K	E	S	Q	R	M	S	D	E	G	R	M	V	Q	D	E	A	D	G	I	R	R	R	C	R	V	V	G	F	A
Template Known Secondary structure														T	S	T	T	T	T																																										T	S	S
Template Predicted Secondary structure
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	A	E	V	Q	H	Q	T	A	E	K	V	E	D	M	K	S	T	M	G	T	Y	L	K	K	Q	A	M	F	Y	Q	E	V	A	T	K	L	T	S	L	A	A	R	Y	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	A	E	M	N	H	F	H	Q	R	R	E	L	D	F	K	H	M	M	Q	N	Y	L	R	Q	Q	I	L	F	Y	Q	R	V	G	Q	Q	L	E	K	T	L	R	M	Y	D
Template Known Secondary structure																																												G	G	G
Template Predicted Secondary structure
Template SS confidence
		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D