Job Description Q8I4E2 Confidence 79.97% Date Sat Apr 13 13:13:52 BST 2013 Rank 279 Aligned Residues 160 % Identity 9% Template c3pltB_ PDB info PDB header:structural protein Chain: B: PDB Molecule:sphingolipid long chain base-responsive protein lsp1; PDBTitle: crystal structure of lsp1 from saccharomyces cerevisiae Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	E	R	M	N	M	F	Q	K	V	F	A	G	P	V	K	Q	N	W	Q	K	M	G	S	A	F	K	T	L	Q	Q	S	F	E	I	D	E	T	V	A	S	R	R	L	T	E	A	L	A	Y	T	A	S	E	Y	H	E	I	G	Q	V	F	D	A	H	T	K	N	D	M	E	P	V	L	E	N	L	Y	S
Query Conservation
Alig confidence																.																																																										.
Template Conservation																.																																																										.
Template Sequence		L	A	R	K	L	S	Q	L	V	K	T	E	K	G	.	V	L	R	A	M	E	V	V	A	S	E	R	R	E	A	A	K	Q	L	S	L	W	G	A	D	N	D	D	D	V	S	D	V	T	D	K	L	G	V	L	I	Y	E	L	G	E	L	Q	D	Q	F	I	D	K	Y	D	Q	.	Y	R	V	T	L	K	S
Template Known Secondary structure		G	G													.																								T	T	S																																.
Template Predicted Secondary structure																.																																																										.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500		.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		Y	K	G	T	V	Q	N	V	P	D	I	I	Q	V	H	K	Q	A	V	Q	K	F	R	D	S	E	G	.	R	L	S	S	A	E	A	E	K	M	K	Q	R	I	D	A	M	S	Y	T	V	I	A	E	V	Q	H	Q	T	A	E	K	V	E	D	M	K	S	T	M	G	T	Y	L	K	K	Q	A	M	F	Y	Q
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		I	R	N	I	E	A	S	V	Q	P	S	R	D	R	K	E	K	I	T	D	E	I	A	H	L	K	Y	K	D	P	Q	S	T	K	I	P	V	L	E	Q	E	L	V	R	A	E	A	E	S	L	V	A	E	A	Q	L	S	N	I	T	R	E	K	L	K	A	A	Y	S	Y	M	F	D	S	L	R	E	L	S	E
Template Known Secondary structure																											T	T	S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		553	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	F	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		212	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D