Job Description Q8I4E2 Confidence 100.00% Date Sat Apr 13 13:13:52 BST 2013 Rank 2 Aligned Residues 358 % Identity 34% Template c3dyuB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:sorting nexin-9; PDBTitle: crystal structure of snx9px-bar (230-595), h32 Resolution 4.10 Å Model Dimensions (Å) X:108.477 Y:57.567 Z:49.796

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		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		E	R	H	E	V	V	M	N	N	G	I	I	Q	W	K	P	I	Q	Q	Y	Y	T	C	I	V	D	K	P	K	K	E	S	K	L	K	G	L	K	S	F	I	A	Y	S	I	T	S	S	L	T	N	I	Q	R	Q	V	S	R	R	Y	K	H	F	D	W	L	H	E	Q	L	S	A	K	Y	V	.	L	I	P	I
Query Conservation																																																																													.
Alig confidence																																																					.	.																							.
Template Conservation																																																					.	.
Template Sequence		E	K	I	P	I	I	V	G	D	Y	G	P	M	W	V	Y	P	T	S	T	F	D	C	V	V	A	D	P	R	K	G	S	K	M	Y	G	L	K	S	Y	I	E	Y	Q	L	T	P	T	N	T	N	.	.	R	S	V	N	H	R	Y	K	H	F	D	W	L	Y	E	R	L	L	V	K	F	G	S	A	I	P	I
Template Known Secondary structure										S	S								S	S															S	S	S	S											S	S	S		.	.																						T	T	T	S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	L	P	E	K	Q	V	A	G	R	Y	E	E	D	L	I	D	H	R	K	H	I	L	Q	L	W	V	N	K	I	C	R	H	P	V	L	S	Q	S	E	V	W	L	H	F	I	S	C	T	D	E	K	D	W	K	N	G	K	R	R	A	E	K	D	E	Y	I	G	G	A	F	L	N	C	I	T	V	P	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	S	L	P	D	K	Q	V	T	G	R	F	E	E	E	F	I	K	M	R	M	E	R	L	Q	A	W	M	T	R	M	C	R	H	P	V	I	S	E	S	E	V	F	Q	Q	F	L	N	F	R	D	E	K	E	W	K	T	G	K	R	K	A	E	R	D	E	L	A	G	V	M	I	F	S	T	M	E	P	E	A
Template Known Secondary structure									S	S		T	T	S																				T		T	T	T	T	T	S								S			S	T	T											T					G	G	G	G	G	G	G				S	S
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	L	D	P	N	N	V	D	M	Q	V	E	R	F	Q	R	S	V	K	T	S	E	E	A	M	R	V	M	Q	E	R	M	N	M	F	Q	K	V	F	A	G	P	V	K	Q	N	W	Q	K	M	G	S	A	F	K	T	L	Q	Q	S	F	E	I	D	E	T	V	A	S	R	R	L	T	E	A	L	A	Y	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	L	D	L	V	E	I	E	Q	K	C	E	A	V	G	K	F	T	K	A	M	D	D	G	V	K	E	L	L	T	V	G	Q	E	H	W	K	R	C	T	G	P	L	P	K	E	Y	Q	K	I	G	K	A	L	Q	S	L	A	T	V	F	S	S	S	G	Y	Q	G	E	T	D	L	N	D	A	I	T	E	A
Template Known Secondary structure																																										T	T																					T	T	S			S	S		S
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.						.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		A	S	E	Y	H	E	I	G	Q	V	F	D	A	H	T	K	N	D	M	E	P	V	L	E	N	L	Y	S	Y	K	G	T	V	Q	N	V	P	D	I	I	Q	V	H	K	Q	A	V	Q	K	F	R	D	S	.	.	.	.	.	E	G	R	L	S	S	A	E	A	E	K	M	K	Q	R	I	D	A	M	S	Y	T
Query Conservation																																																							.	.	.	.	.
Alig confidence																																																							.	.	.	.	.
Template Conservation
Template Sequence		G	K	T	Y	E	E	I	A	S	L	V	A	E	Q	P	K	K	D	L	H	F	L	M	E	C	N	H	E	Y	K	G	F	L	G	C	F	P	D	I	I	G	T	H	K	G	A	I	E	K	V	K	E	S	D	K	L	V	A	T	S	K	I	T	L	Q	D	K	Q	N	M	V	K	R	V	S	I	M	S	Y	A
Template Known Secondary structure														T	S	G	G	G	T																	T															T	T								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	A	E	V	Q	H	Q	T	A	E	K	V	E	D	M	K	S	T	M	G	T	Y	L	K	K	Q	A	M	F	Y	Q	E	V	A	T	K	L	T	S	L	A	A	R	Y	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	A	E	M	N	H	F	H	S	N	R	I	Y	D	Y	N	S	V	I	R	L	Y	L	E	Q	Q	V	Q	F	Y	E	T	I	A	E	K	L	R	Q	A	L	S	R	F	P
Template Known Secondary structure																																												T	T	S
Template Predicted Secondary structure
Template SS confidence
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D