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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank290Aligned Residues249
% Identity22%Templatec3begA_
PDB info PDB header:transferase/splicingChain: A: PDB Molecule:serine/threonine-protein kinase srpk1; PDBTitle: crystal structure of sr protein kinase 1 complexed to its substrate2 asf/sf2
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   109110.........120.........130.........140.........150.........160.........170... ......180
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Query Sequence  ELNHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDH. . . . . . . . KNVVKCY
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Template Sequence  DLFNGRYHVIRKLGWGHFSTVWLSWDIQGKK. . FVAMKVVK. . . SAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLL
Template Known Secondary structure 
TTT
SSSSSSS..
...S
SS
TT
TTSTTB

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   74.....80.........90.........100.... .....110.. .......120.........130.........140........
 
   181........190.........200 .........210.........220....... ..230.........240.........250
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Query Sequence  GVAAIDEPLLVVMELVPGGA. . . . . LDKYLQKNSSVQWPEKLDIIAQVAAGL. AYIHSKNIIHRDIAARNILYGKG. . . .
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Template Sequence  DDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYI
Template Known Secondary structure 

B
SS
B






BTTTS


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SGGG


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   149150.........160.........170.........180.........190.........200.........210.........220........
 
   251........260.........270.........280.........290.........300......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . VAKVSDFGLSRVGTEYQMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVI
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Template Sequence  RRLAAEAAGNFLVNPLEPKNAEKLKVKIADLGNACWVH. . KHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELA
Template Known Secondary structure  TT




S

SS
GGGTTT




TT
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S
S

S
GGG

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T
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   229230.........240.........250.........260...... ...270.........280.........290.........300......
 
   307..310.........320.........330 .........340
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Query Sequence  ENGAQPYPEMLVVQVHQKVGRDDY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RMPISQKAPA
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Template Sequence  T. GDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAA
Template Known Secondary structure  .SS
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SSS

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TT
TTB
SSSSBSS

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TT


TT
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   546 ...550.........560.........570.........580.........590.........600.........610.........620....
 
   341........350.........360.....
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Query Sequence  MLADVIKKCWIRDPQQRPTMSQVVQ
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Template Sequence  GFTDFLLPMLELIPEKRATAAECLR
Template Known Secondary structure  TT
SSTTTS

S
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   625....630.........640.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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