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Job DescriptionQ20933
Confidence97.89%DateFri May 3 21:32:28 BST 2013
Rank423Aligned Residues133
% Identity26%Templatec3hamA_
PDB info PDB header:transferaseChain: A: PDB Molecule:aminoglycoside phosphotransferase; PDBTitle: structure of the gentamicin-aph(2")-iia complex
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   119120.........130.........140.........150.........160.........170.........180.........190........
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Query Sequence  KVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDEPLLVVMELVPG
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Template Sequence  RYLSSGDDSDTFLC. . . . NEQ. . . YVVKVPK. . . . RDSVRISQKREFELYRFLENCKLSYQIPAVVYQSDRFNIMKYIKG
Template Known Secondary structure 
SS....TTT...S....SSTTS

SSB




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   22.......30..... ... .40..... ....50.........60.........70.........80.........90
 
   199200.........210.........220.........230...
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Query Sequence  GALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ERITYEQYH. . KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDEMLEHI
Template Known Secondary structure  B


T..TS
S


TTSTTB

TT


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   91........ 100.........110.........120.........130.........140.........150.........160........
 
   234.....240.........250.. .......260....
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Query Sequence  . . . . . . . . . . . . . . . . . . NIIHRDIAARNILYGKGVA. KVSDFGLSRVGT
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Template Sequence  ETIYENILNNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVGD
Template Known Secondary structure  T
GGGG




S

SGGGTT


TT

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   169170.........180.........190.........200.........210........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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