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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank116Aligned Residues231
% Identity23%Templatec4g3dE_
PDB info PDB header:transferaseChain: E: PDB Molecule:nf-kappa-beta-inducing kinase; PDBTitle: crystal structure of human nf-kappab inducing kinase (nik)
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   110.........120.........130.........140.........150.........160.........170.........180.........
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Query Sequence  LNHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDEPL
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Template Sequence  YEYREEVHWATHGRGSFGEVHRMEDKQTGF. . QCAVKKVRLEVFRA. . . . . . . EELMACAGLTSPRIVPLYGAVREGPWV
Template Known Secondary structure  TB

BTTT


SSSS
TTT

..TTT

T.......TTTT


TTB

TT
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   391........400.........410.........420 .........430.... .....440.........450.........460.
 
   190.........200.........210.........220.........230.........240......... 250.........260.......
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Query Sequence  LVVMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNILYGK. . GVAKVSDFGLSRVGTEYQ
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Template Sequence  NIFMELLEGGSLGQLVKEQGCLPEDRALYYLGQALEGLEYLHSRRILHGDVKADNVLLSSDGSHAALCDFGHAVCLQP. .
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TT
BSSS

TT




GGG
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   466...470.........480.........490.........500.........510.........520.........530.........540...
 
   268.270.........280.........290.........300.........310.........320.........330.........340.......
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Query Sequence  MDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPISQKAPAMLADVIK
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Template Sequence  . . . . . . . GTTHMAPEVVLGRSCDAKVDVWSSCCMMLHMLN. GCHPP. . . . . . . . . . . . . . . . PVREIPPSCAPLTAQAIQ
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TT



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   558.560.........570.........580.........590 ..... ....600.........610...
 
   348.350.........360.........370.....
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Query Sequence  KCWIRDPQQRPTMSQVVQMMYEITGKKD
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Template Sequence  EGLRKEPIHRVSAAELGGKVNRALQQVG
Template Known Secondary structure  T
SSTTTS

TT
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   632.......640.........650.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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