Return to main results Retrieve Phyre Job Id

Job DescriptionQ20933
Confidence97.10%DateFri May 3 21:32:28 BST 2013
Rank432Aligned Residues133
% Identity21%Templatec3tdvB_
PDB info PDB header:transferaseChain: B: PDB Molecule:gentamicin resistance protein; PDBTitle: structure of the gdp complex of wild-type aminoglycoside 2'-2 phosphotransferase-iiia
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   119120.........130.........140.........150.........160.........170.... .....180....... ..190....
Predicted Secondary structure 
















...


.
Query SS confidence 























































. . .












.






Query Sequence  KVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHK. . . NVVKCYGVAAIDE. PLLVVME
Query Conservation    

 
 

 
             



                 
  

  
 
 ...


          .   

 
Alig confidence 













.......











....


















...












.






Template Conservation    
  
  
    
.......    


     ....     
  
   
  
       

                  
Template Sequence  ESLGEGFRNYAILV. . . . . . . NGDWVFRFPKSQ. . . . QGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYR
Template Known Secondary structure 
SS.......TTTSS....GGG
SSB



TTS
Template Predicted Secondary structure 




.......





....













Template SS confidence 















































































   25....30........ .40.........50 .........60.........70.........80.........90...
 
   195....200.........210.........220.........230...
Predicted Secondary structure 
















.........................................
Query SS confidence 






































. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  LVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation      
 
                     
   
  

  .........................................
Alig confidence 












..























.........................................
Template Conservation     
         ..             
   
  

                                           
Template Sequence  KVQGQILGEDGMA. . VFPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDY
Template Known Secondary structure 


S
..T

S
TT

B

TGGGS
Template Predicted Secondary structure 












..

























Template SS confidence 















































































   94.....100...... ...110.........120.........130.........140.........150.........160.........170.
 
   234.....240.........250. ........260....
Predicted Secondary structure  ...................

















.....







Query SS confidence  . . . . . . . . . . . . . . . . . . .

















. . . . .












Query Sequence  . . . . . . . . . . . . . . . . . . . NIIHRDIAARNILYGKGV. . . . . AKVSDFGLSRVGT
Query Conservation  ...................   
 


  
       ..... 

 




    
Alig confidence  ...................

















.....












Template Conservation                      
 



   


         
 





 
  

Template Sequence  LTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISD
Template Known Secondary structure 





S


GGG
TT
SS
S


TT

Template Predicted Secondary structure 




























Template SS confidence 






















































   172.......180.........190.........200.........210.........220......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D