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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank212Aligned Residues261
% Identity18%Templatec2v62A_
PDB info PDB header:transferaseChain: A: PDB Molecule:serine/threonine-protein kinase vrk2; PDBTitle: structure of vaccinia-related kinase 2
Resolution1.7 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   116...120... ......130.........140.........150.........160. ........170.........180
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Query Sequence  TMTKVLGE. . . . GAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEI. . . . . . . . . . . ITEARLMRGFDHKNVVKCY
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Template Sequence  VLDDMEGNQWVLGKKILIYLAFPTNKPE. . KDARHVVKVEYQEGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFY
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TTS


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   20.........30.........40....... ..50.........60.........70.........80.........90.......
 
   181....... .190.........200.........210.........220.........230.........240.........250 ...
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Query Sequence  GVAAIDEP. . . . LLVVMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNILYGKG. . . VAK
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Template Sequence  GSGLTEFKGRSYRFMVMERL. GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVY
Template Known Secondary structure  SSS

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BGGGB

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SGGGSSSTTS
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   105....110.........120.... .....130.........140.........150.........160.........170.........180...
 
   254.....260..... ....270.........280.........290.........300.........310........
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Query Sequence  VSDFGLSRVGTE. . . . . . . . YQMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLV. . . . . . .
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Template Sequence  LADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLC. GKLPWEQNLKDPVAVQT
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GGG
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TTGGGTT
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   184.....190.........200.........210.........220.........230.........240..... ....250.........260..
 
   319320.........330.........340.........350.........360.........370.........380
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Query Sequence  . . VQVHQKVGRDDYRMPISQKAPAMLADVIKKCWIRDPQQRPTMSQVVQMMYEITGKKDKTSVN
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Template Sequence  AKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGIPLGPLDFS
Template Known Secondary structure  TTTS
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   263......270.........280.........290.........300.........310.........320......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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