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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank267Aligned Residues239
% Identity19%Templatec3rgfA_
PDB info PDB header:transferase,transcriptionChain: A: PDB Molecule:cyclin-dependent kinase 8; PDBTitle: crystal structure of human cdk8/cycc
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   111........120.........130.........140.........150.........160.........170.........180.. ......
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Query Sequence  NHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGV. . AAIDEP
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Template Sequence  ERERVEDLFEYEGCKVGHVYKAKRKDGKDDKDYALKQIEGTGISM. . . . SACREIALLRELKHPNVISLQKVFLSHADRK
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   12.......20.........30.........40.........50...... ...60.........70.........80.......
 
   189190.........200..... ....210.........220.........230.........240.........250. ........260..
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Query Sequence  LLVVMELVPGGALDKYL. QKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNILYGKGV. . . . . AKVSDFGLSRV
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Template Sequence  VWLLFDYAEHDLWHIIKFHRASKLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARV
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   93......100.........110.........120.........130.........140.........150.........160.........170..
 
   263......270.........280.........290.........300.........310... ......320.........330.
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Query Sequence  GTEYQMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPY. . . PEMLVVQVHQKVGRDDYR. . . . . . . .
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Template Sequence  TFW. . . . . . . . . . . YRAPELLLGARHYTKAIDIWAIGCIFAELLT. SEPIFHCRQNPYHHDQLDRIFNVMGFPADKDWED
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   196.. .200.........210.........220......... 230.........240.........250.........260...
 
   332.......340.........350.........360.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . MPISQKAPAMLADVIKKCWIRDPQQRPTMSQVVQ
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Template Sequence  IKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ
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   270.........280.........290.........300.........310.........320.........330.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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