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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank28Aligned Residues249
% Identity20%Templatec3soaA_
PDB info PDB header:transferase/transferase inhibitorChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase type ii subunit PDBTitle: full-length human camkii
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   112.......120.........130.........140.........150.........160.........170.........180.........190.
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Query Sequence  HADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDEPLLV
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Template Sequence  TEEYQLFEELGKGSVVRRCV. . . . KVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL
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....TTTTS
S


BTTB


SS
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   10.........20......... 30.........40.........50.........60.........70.........80.....
 
   192.......200.........210.........220.........230.........240.........250. ........260.... ..
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Query Sequence  VMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNILYGKGV. . . . AKVSDFGLSRVGT. EY
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Template Sequence  IFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQ
Template Known Secondary structure 


B

B
S


TT
B



SSTTSBSSTT




SS
B


TT
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   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   267..270.........280.........290.........300.........310.........320.........330..... ....340....
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Query Sequence  QMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPIS. . QKAPAMLAD
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Template Sequence  QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLV. GYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKD
Template Known Secondary structure 
B


S
S
GGG

TT

B
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S


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   168.170.........180.........190.........200........ .210.........220.........230.........240......
 
   345....350.........360.....
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Query Sequence  VIKKCWIRDPQQRPTMSQVVQ
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Template Sequence  LINKMLTINPSKRITAAEALK
Template Known Secondary structure  S
SSTTTS

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   247..250.........260.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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