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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank44Aligned Residues249
% Identity29%Templatec4aojA_
PDB info PDB header:transferaseChain: A: PDB Molecule:high affinity nerve growth factor receptor; PDBTitle: human trka in complex with the inhibitor az-23
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   108.110.........120.........130.........140.........150.........160.........170.........180.......
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Query Sequence  WELNHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDE
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Template Sequence  HHIKRRDIVLKWELGEGAFGKVFLAECHNLLPKMLVAVKALK. . EASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR
Template Known Secondary structure 
B

GGG
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S..

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   503......510.........520.........530.........540.... .....550.........560.........570.........580
 
   188.190.........200........ .210.........220.........230.........240..... ....250.........260..
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Query Sequence  PLLVVMELVPGGALDKYLQKN. . . . SSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRV
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Template Sequence  PLLMVFEYMRHGDLNRFLRSHGPDPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGTML.
Template Known Secondary structure  S

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   584.....590.........600.........610.........620.........630.........640.........650.........660..
 
   263......270.........280.........290.........300.........310.........320.........330.........340..
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Query Sequence  GTEYQMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPISQKAPAML
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Template Sequence  . . . . . . . . . . . . PIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGR. ELERPRACPPEV
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GGG

TT



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TT
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   690.........700.........710.........720.........730.........740.... .....750......
 
   343......350.........360.........370..
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Query Sequence  ADVIKKCWIRDPQQRPTMSQVVQMMYEITG
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Template Sequence  YAIMRGCWQREPQQRHSIKDVHARLQALAQ
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   757..760.........770.........780......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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