Return to main results Retrieve Phyre Job Id

Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank312Aligned Residues252
% Identity20%Templatec3coiA_
PDB info PDB header:transferaseChain: A: PDB Molecule:mitogen-activated protein kinase 13; PDBTitle: crystal structure of p38delta kinase
Resolution2.09 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.........120.........130.........140.........150.........160.........170.......
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Query Sequence  VLVNPIGRQSWELNHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVV
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Template Sequence  FYKQDVNKTAWEL. PKTYVSPTHVGSGAYGSVCSAIDKRSGE. . KVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVI
Template Known Secondary structure  TT.TT
SSTTTT..SSTTSS


TTB
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   910.........20. ........30.........40......... 50.........60.........70.........80.....
 
   178.180...... ...190.........200.........210.........220.........230.........240..... ....250
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Query Sequence  KCYGVAAID. . . . . . EPLLVVMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKG
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Template Sequence  GLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIM. . . GLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDC
Template Known Secondary structure 

S
S
SSGGG





SGGGTT...TS


TT


SS

GGG
TT
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   86...90.........100.........110........ .120.........130.........140.........150.........160..
 
   251........260.........270.........280.........290.........300.........310.........320.........330
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Query Sequence  VAKVSDFGLSRVGTEYQMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDY
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Template Sequence  ELKILDFGLARHVV. . . . . . . . . TRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLT. GKTLFKGKDYLDQLTQILKVTG
Template Known Secondary structure 

STT
TT


.........SB

S
S

S


TT.SS
SSBSS

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   163......170...... ...180.........190.........200.........210 .........220.........230..
 
   331. .......340.........350.........360.....
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Query Sequence  RM. . . . . . . . . . . . . . . . . . . . . . . . . . . . . PISQKAPAMLADVIKKCWIRDPQQRPTMSQVVQ
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Template Sequence  VPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT
Template Known Secondary structure  B

TT
S
TS
B
SS

TTTT
TTS
S
S
TTTS

T
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   241........250.........260.........270.........280.........290.........300....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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