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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank295Aligned Residues252
% Identity20%Templatec2vagA_
PDB info PDB header:transferaseChain: A: PDB Molecule:dual specificity protein kinase clk1; PDBTitle: crystal structure of di-phosphorylated human clk1 in2 complex with a novel substituted indole inhibitor
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   109110.........120.........130.........140.........150.........160.........170...... ...180..
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Query Sequence  ELNHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNV. . . . . . VKCYGV
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Template Sequence  DVLSARYEIVDTLGEGAFGKVVECID. HKAGGRHVAVKIVK. . . NVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEW
Template Known Secondary structure 
TTTTT.TTTTT
...SS
TT
TT
B

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   155....160.........170.........180 .........190.... .....200.........210.........220.........230
 
   183......190.........200 .........210.........220.........230.........240..... ....250.........260
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Query Sequence  AAIDEPLLVVMELVPGGA. LDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLS
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Template Sequence  FEHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNKRDE
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BTTT



TT




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   231........240.........250.........260.........270.........280.........290.........300.........310
 
   261........270.... .....280.........290.........300.........310.........320........
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Query Sequence  RVGTEYQMDPSKRV. . . . . . . . . . . . PIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRD
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Template Sequence  RTLINPDIKVVDFGSATYDDEHHSTLVRHYRAPEVILALGWSQPCDVWSIGCILIEYYL. GFTVFPTHDSKEHLAMMERI
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   314.....320.........330.........340.........350.........360.........370.. .......380.........390..
 
   329330. ........340.........350.........360.....
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Query Sequence  DYR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MPISQKAPAMLADVIKKCWIRDPQQRPTMSQVVQ
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Template Sequence  LGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK
Template Known Secondary structure 
S


S
GGGTT


TTS


GGGG
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ST
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TT
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   395....400.........410.........420.........430.........440.........450.........460.........470...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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