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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank184Aligned Residues247
% Identity23%Templatec3h4jB_
PDB info PDB header:transferaseChain: B: PDB Molecule:snf1-like protein kinase ssp2; PDBTitle: crystal structure of pombe ampk kdaid fragment
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   113......120.........130.........140.........150....... ..160.........170.........180.........190.
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Query Sequence  ADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQ. IKEIITEARLMRGFDHKNVVKCYGVAAIDEPLLV
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Template Sequence  GPYIIRETLGEGSFGKVKLATHYKTQQ. . KVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVM
Template Known Secondary structure  TTTTTTT

..TT
STT


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   32.......40.........50........ .60.........70.........80.........90.........100.........
 
   192.......200.........210.........220.........230.........240..... ....250.........260.........270
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Query Sequence  VMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRVGTEYQMDP
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Template Sequence  VIEYAGGELFDYIVEK. KRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLK
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   110.........120..... ....130.........140.........150.........160.........170.........180........
 
   271... .....280.........290.........300.........310.........320.........330.........340.........
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Query Sequence  SKRV. PIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPISQKAPAMLADVIKKC
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Template Sequence  TSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLV. GRLPFDDEFIPNLFKKVNSCVY. . VMPDFLSPGAQSLIRRM
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TTSTTTS
GGGS

SGGG
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   189190.........200.........210.........220...... ...230.........240........ .250.........260.....
 
   350.........360.....
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Query Sequence  WIRDPQQRPTMSQVVQ
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Template Sequence  IVADPMQRITIQEIRR
Template Known Secondary structure  S
SSGGGS

TT
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   266...270.........280.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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