Return to main results Retrieve Phyre Job Id

Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank11Aligned Residues241
% Identity26%Templatec3qa8H_
PDB info PDB header:immune system, signaling proteinChain: H: PDB Molecule:mgc80376 protein; PDBTitle: crystal structure of inhibitor of kappa b kinase beta
Resolution3.60 Å
Model Dimensions (Å)X: Y: Z:

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   116...120.........130.........140.........150.........160.........170.........180.. .......
Predicted Secondary structure 

















......

Query SS confidence 


































































. . . . . .






Query Sequence  TMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGV. . . . . . AAIDEPL
Query Conservation       

 
 

 
             



                 
  

  
 
 


     ......       
Alig confidence 























..









.





























......






Template Conservation 

   

 
 

 

         .. 



 
   .           
  

  
 
 


                  
Template Sequence  EMKERLGTGGFGYVLRWIHQDTGE. . QVAIKQCRQE. LSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP
Template Known Secondary structure 






B
SSSB





TTTT
..




S
.



BTTB



TTT



TTSS
Template Predicted Secondary structure 









..


.
















Template SS confidence 















































































   16...20.........30......... 40......... 50.........60.........70.........80.........90..
 
   190.........200.........210 .........220.........230.........240.........250. ........260..
Predicted Secondary structure 










...























....





Query SS confidence 




















. . .








































. . . .










Query Sequence  LVVMELVPGGALDKYLQKNSS. . . VQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNILYGKGV. . . . AKVSDFGLSRV
Query Conservation   

 
    
 
         ...            
   
  

     
 


  
       .... 

 




  
Alig confidence 




















...








































....










Template Conservation 





  

 
   
        
 
     
  

  

 


   







 



         

 


 

 
Template Sequence  LLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKE
Template Known Secondary structure 



SS
BSSS
TT


SSTTB





STT

SSS

S




B
Template Predicted Secondary structure 
































Template SS confidence 















































































   93......100.........110.........120.........130.........140.........150.........160.........170..
 
   263......270.........280.........290.........300.........310.........320..... .
Predicted Secondary structure 
































................
Query SS confidence 






























































. . . . . . . . . . . . . . . .
Query Sequence  GTEYQMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKV. . . . . . . . . . . . . . . . G
Query Conservation                 
 


          






  
 

 
 
  
            
................ 
Alig confidence 












































.
















................
Template Conservation          
  


 
 


 
    
  
 













.
  

            
                
Template Sequence  LDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECIT. GFRPFLPNWQPVQWHGKVRIVVYDDLTGAVKFSS
Template Known Secondary structure  TTS







S

TT
SS
SS

S

STTS.S

S

SS
SSTT



S



SSS



S
Template Predicted Secondary structure 















.



















Template SS confidence 















































































   173......180.........190.........200.........210....... ..220.........230.........240.........250.
 
   327..330.........340.........350.........360
Predicted Secondary structure 


















Query SS confidence 

































Query Sequence  RDDYRMPISQKAPAMLADVIKKCWIRDPQQRPTM
Query Conservation                 
  

  

  

  


 
Alig confidence 

































Template Conservation                     
   
   
  

  
Template Sequence  VLPTPNHLSGILAGKLERWLQCMLMWHQRTDPQN
Template Known Secondary structure  SS

S



GGGS
SS



TT
Template Predicted Secondary structure 














Template SS confidence 

































   258.260.........270.........280.........290.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D