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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank245Aligned Residues250
% Identity22%Templatec3mi9A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:cell division protein kinase 9; PDBTitle: crystal structure of hiv-1 tat complexed with human p-tefb
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   113......120.........130.........140.........150.........160.........170.........180.........190..
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Query Sequence  ADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDEPLLVV
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Template Sequence  SKYEKLAKIGQGTFGEVFKARHRKTGQ. . KVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKGSIYLV
Template Known Secondary structure  GG
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   17..20.........30.........40... ......50.........60.........70.........80.........90....
 
   193......200.........210.........220.........230.........240..... ....250.........260... ....
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Query Sequence  MELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRVG. . . . TEYQ
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Template Sequence  FDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQP
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   103......110.........120.........130.........140.........150.........160.........170.........180..
 
   268.270.........280...... ...290.........300.........310.........320.........330.......
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Query Sequence  MDPSKRVPIRWLSPETIVS. FLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPISQK. . . . . . . . .
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Template Sequence  NRYNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWT. RSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELY
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   183......190.........200.........210.........220... ......230.........240.........250.........260.
 
   338.340.........350.........360.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . APAMLADVIKKCWIRDPQQRPTMSQVVQ
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Template Sequence  EKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN
Template Known Secondary structure  TSS


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   263......270.........280.........290.........300.........310.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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