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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank139Aligned Residues239
% Identity26%Templatec2h6dA_
PDB info PDB header:signaling protein,transferaseChain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit PDBTitle: protein kinase domain of the human 5'-amp-activated protein2 kinase catalytic subunit alpha-2 (ampk alpha-2 chain)
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   109110.........120.........130.........140.........150... ......160.........170.........180.......
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Query Sequence  ELNHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKV. TKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDE
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Template Sequence  RVKIGHYVLGDTLGVGTFGKVKIGEHQLTGH. . KVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPT
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TT
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   10.........20.........30.........40 .........50.........60.........70.........80.......
 
   188.190.........200.........210.........220.........230.........240..... ....250.........260......
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Query Sequence  PLLVVMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRVGTEY
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Template Sequence  DFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS. .
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   88.90.........100.........110.........120.........130.........140.........150.........160.....
 
   267..270.........280........ .290.........300.........310.........320.........330.........340.....
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Query Sequence  QMDPSKRVPIRWLSPETIVSFL. YTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPISQKAPAMLADV
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Template Sequence  . . . . . . . . . . . DAAPEVISGRLYAGPEVDIWSCGVILYALLC. GTLPFDDEHVPTLFKKIRGGVF. . YIPEYLNRSVATL
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TGGGTTS


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   166...170.........180.........190...... ...200.........210........ .220.........230.
 
   346...350.........360.....
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Query Sequence  IKKCWIRDPQQRPTMSQVVQ
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Template Sequence  LMHMLQVDPLKRATIKDIRE
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   245....250.........260....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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