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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank176Aligned Residues250
% Identity23%Templatec4dc2A_
PDB info PDB header:transferase/transferase substrateChain: A: PDB Molecule:protein kinase c iota type; PDBTitle: structure of pkc in complex with a substrate peptide from par-3
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   110.........120.........130.........140.........150.........160.........170. ........180........
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Query Sequence  LNHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGF. DHKNVVKCYGVAAIDEP
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDR. . IYAMRVVKKELVN. . . IDWVQTEKHVFEQASNHPFLVGLHSCFQTESR
Template Known Secondary structure 

GGG
SSTTTT..GGGT
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TT
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   239240.........250.........260........ .270.........280. ........290.........300.........310...
 
   189190.........200.........210.........220.........230.........240..... ....250.........260.. ....
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Query Sequence  LLVVMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRV. GTEY
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Template Sequence  LFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG
Template Known Secondary structure 

TT
BSS

TT
B




GGG
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TT
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TT
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   318.320.........330.........340.........350.........360.........370.........380.........390.......
 
   267..270.........280.........290.........300.........310.........320....... ..330.........340.....
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Query Sequence  QMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGR. DDYRMPISQKAPAMLADV
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Template Sequence  DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA. GRSPFDIVGSNTEDYLFQVILEKQIRIPRSLSVKAASV
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B



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GGG

TT

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   398.400.........410.........420.........430........ .440.........450.........460.........470......
 
   346...350........ .360.....
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Query Sequence  IKKCWIRDPQQRP. . . . . . TMSQVVQ
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Template Sequence  LKSFLNKDPKERLGCHPQTGFADIQG
Template Known Secondary structure  T
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TTTSTT
STTT
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   483......490.........500........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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