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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank288Aligned Residues233
% Identity24%Templatec2xs0A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:mitogen-activated protein kinase 8; PDBTitle: linear binding motifs for jnk and for calcineurin antagonistically2 control the nuclear shuttling of nfat4
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   113......120.........130.........140.........150.........160.........170.........180..... .
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Query Sequence  ADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGVAAI. . . . . . D
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Template Sequence  KRYQNLKPIGSGAQGIVCAAYDAILER. . NVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF
Template Known Secondary structure  TTTTTTTT..
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   24.....30.........40.........50 .........60.........70.........80.........90.........100.
 
   187..190.........200.........210.........220.........230.........240..... ....250.........260.....
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Query Sequence  EPLLVVMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRVGTE
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Template Sequence  QDVYIVMELMDANLCQVI. . . QMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLATRY. .
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   102.......110......... 120.........130.........140.........150.........160.........170......
 
   266...270.........280.........290.........300.........310.........320........
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Query Sequence  YQMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRD. . . . . . . . . . . . . . . . .
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Template Sequence  . . . . . . . . . . . . YRAPEVILGMGYKENVDIWSVGCIMGEMIK. GGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVR
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   191........200.........210.........220 .........230.........240.........250.......
 
   329330.........340.........350.........360.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . DYRMPISQKAPAMLADVIKKCWIRDPQQRPTMSQVVQ
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Template Sequence  TYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ
Template Known Secondary structure  TSS






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   258.260.........270.........280.........290.........300.........310.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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