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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank238Aligned Residues228
% Identity24%Templatec2jc6C_
PDB info PDB header:transferaseChain: C: PDB Molecule:calcium/calmodulin-dependent protein kinase type 1d; PDBTitle: crystal structure of human calmodulin-dependent protein2 kinase 1d
Resolution2.3 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   112.......120.........130.........140.........150.........160.........170.........180.........190.
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Query Sequence  HADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDEPLLV
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Template Sequence  KKIFEFKETLGTGAFSEVVLAEEKATGK. . LFAVKCIPKK. . . . . . . ASIENEIAVLRKIKHENIVALEDIYESPNHLYL
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   20.........30.........40....... ..50....... ..60.........70.........80.........90
 
   192.......200.........210.........220.........230.........240.........250.........260.........270.
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Query Sequence  VMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNILYGKGVAKVSDFGLSRVGTEYQMDPS
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Template Sequence  VMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIM. . . . . . . . . . . . . .
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   97..100.........110.........120.........130.........140.........150.........160..
 
   272.......280.........290.........300.........310.........320.........330..... ....340.........
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Query Sequence  KRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPIS. . QKAPAMLADVIKKC
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Template Sequence  . . ISPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLC. GYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNL
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   163......170.........180.........190...... ...200.........210.........220.........230.........
 
   350.........360.....
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Query Sequence  WIRDPQQRPTMSQVVQ
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Template Sequence  MEKDPNKRYTCEQAAR
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   260.........270.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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