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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank47Aligned Residues248
% Identity26%Templatec4fieB_
PDB info PDB header:transferaseChain: B: PDB Molecule:serine/threonine-protein kinase pak 4; PDBTitle: full-length human pak4
Resolution3.11 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   112.......120.........130.........140.........150.........160.........170.........180.........190.
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Query Sequence  HADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDEPLLV
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Template Sequence  RSYLDNFIKIGEGSTGIVCIATVRSSGK. . LVAVKKMDLRKQQRRE. . LLFNEVVIMRDYQHENVVEMYNSYLVGDELWV
Template Known Secondary structure  GGT
SS
TTT

..STT
SSGG..G


TTB

TT
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   318.320.........330.........340..... ....350.........360. ........370.........380.........390...
 
   192.......200.........210.........220.........230.........240..... ....250.........260.........270
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Query Sequence  VMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRVGTEYQMDP
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Template Sequence  VMEFLEGGALTDIVT. HTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRR
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TT.S


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STTT
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TT


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B
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   394.....400........ .410.........420.........430.........440.........450.........460.........470..
 
   271........280.........290.........300.........310.........320.........330 .........340.........
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Query Sequence  SKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDY. RMPISQKAPAMLADVIKKC
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Template Sequence  KLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVD. GEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRL
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TTT

TT

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S
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   473......480.........490.........500......... 510.........520.........530.........540.........550.
 
   350.........360.....
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Query Sequence  WIRDPQQRPTMSQVVQ
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Template Sequence  LVRDPAQRATAAELLK
Template Known Secondary structure  S
SSTTTS

TT
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   553......560........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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