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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank39Aligned Residues249
% Identity26%Templatec4fijA_
PDB info PDB header:transferaseChain: A: PDB Molecule:serine/threonine-protein kinase pak 4; PDBTitle: catalytic domain of human pak4
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   111........120.........130.........140.........150.........160.........170.........180.........190
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Query Sequence  NHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDEPLL
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Template Sequence  PRSYLDNFIKIGEGSTGIVCIATVRSSGK. . LVAVKKMDLRKQQRRE. . LLFNEVVIMRDYQHENVVEMYNSYLVGDELW
Template Known Secondary structure  GGGT
SSSTTT

..STT
SSGG..G


TTB

TT
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   317..320.........330.........340..... ....350.........360. ........370.........380.........390..
 
   191........200.........210.........220.........230.........240..... ....250.........260.........
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Query Sequence  VVMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRVGTEYQMD
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Template Sequence  VVMEFLEGGALTDIVT. HTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR
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TT.S


TT



SGGG
TT




TT


SS


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   393......400........ .410.........420.........430.........440.........450.........460.........470.
 
   270.........280.........290.........300.........310.........320........ .330.........340........
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Query Sequence  PSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRD. DYRMPISQKAPAMLADVIKK
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Template Sequence  RKLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVD. GEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDR
Template Known Secondary structure  B


S
GGG

TT

B
T.SS
TTTTS
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TTGGGS
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   472.......480.........490.........500......... 510.........520.........530.........540.........550
 
   349350.........360.....
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Query Sequence  CWIRDPQQRPTMSQVVQ
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Template Sequence  LLVRDPAQRATAAELLK
Template Known Secondary structure  S
SSTTTS

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   552.......560........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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