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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank125Aligned Residues252
% Identity21%Templatec2vd5A_
PDB info PDB header:transferaseChain: A: PDB Molecule:dmpk protein; PDBTitle: structure of human myotonic dystrophy protein kinase in2 complex with the bisindoylmaleide inhibitor bim viii
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   109110.........120.........130.........140.........150.. .......160.........170.........180.......
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Query Sequence  ELNHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEK. VTKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDE
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Template Sequence  RLQRDDFEILKVIGRGAFSEVAVVKMKQTGQ. . VYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDEN
Template Known Secondary structure  S

GGG
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..GGG

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   65....70.........80.........90..... ....100.........110.........120.........130.........140..
 
   188.190.........200..... ....210.........220.........230.........240..... ....250.........260.....
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Query Sequence  PLLVVMELVPGGALDKYL. QKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRVGTE
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Template Sequence  YLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRA
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   143......150.........160.........170.........180.........190.........200.........210.........220..
 
   266 ...270.........280.... .....290.........300.........310.........320.........330......
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Query Sequence  Y. . QMDPSKRVPIRWLSPETI. . . . . . . VSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPISQ
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Template Sequence  DGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFY. GQTPFYADSTAETYGKIVHYKEHLSLPG
Template Known Secondary structure  TS

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   223......230.........240.........250.........260.........270... ......280.........290.........300.
 
   337..340.........350....... ..360.....
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Query Sequence  KAPAMLADVIKKCWIRDPQQR. . . PTMSQVVQ
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Template Sequence  . VPEEARDFIQRLLC. PPETRLGRGGAGDFRT
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   306...310......... 320.........330.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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