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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank30Aligned Residues249
% Identity29%Templatec2c30A_
PDB info PDB header:transferaseChain: A: PDB Molecule:serine/threonine-protein kinase pak 6; PDBTitle: crystal structure of the human p21-activated kinase 6
Resolution1.6 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   111........120.........130.........140.........150.........160.........170.........180.........190
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Query Sequence  NHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDEPLL
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Template Sequence  PRLLLDSYVKIGEGSTGIVCLAREKHSGR. . QVAVKMMDLRKQQRRE. . LLFNEVVIMRDYQHFNVVEMYKSYLVGEELW
Template Known Secondary structure  TTTTT

..TTT

S..TT


TTB

TT
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   403......410.........420.........430. ........440....... ..450.........460.........470........
 
   191........200.........210.........220.........230.........240..... ....250.........260.........
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Query Sequence  VVMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRVGTEYQMD
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Template Sequence  VLMEFLQGGALTDIVSQVR. LNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK
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S
BTT

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TT



SGGG
TT




TT


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   479480.........490....... ..500.........510.........520.........530.........540.........550.......
 
   270.........280.........290.........300.........310.........320.........330 .........340........
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Query Sequence  PSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDY. RMPISQKAPAMLADVIKK
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Template Sequence  RKLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVD. GEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLER
Template Known Secondary structure  B


S
GGG

TT

B
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TTTTS
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   558.560.........570.........580.........590..... ....600.........610.........620.........630......
 
   349350.........360.....
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Query Sequence  CWIRDPQQRPTMSQVVQ
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Template Sequence  MLVRDPQERATAQELLD
Template Known Secondary structure  S
SSTTTS

T
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   638.640.........650....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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