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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank127Aligned Residues251
% Identity25%Templatec1zrzA_
PDB info PDB header:transferaseChain: A: PDB Molecule:protein kinase c, iota; PDBTitle: crystal structure of the catalytic domain of atypical2 protein kinase c-iota
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   110.........120.........130.........140.........150.. .......160.........170 .........180.......
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Query Sequence  LNHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEK. VTKEQIKEIITEARLMRG. FDHKNVVKCYGVAAIDE
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDR. . IYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES
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STT
SSTTT

..GGG

STTTTTTTSSTTB


B
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   240.........250.........260......... 270.........280.........290.........300.........310.......
 
   188.190.........200.........210.........220.........230.........240..... ....250.........260......
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Query Sequence  PLLVVMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRVGTEY
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Template Sequence  RLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP
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T
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   318.320.........330.........340.........350.........360.........370.........380.........390.......
 
   267..270.........280.........290.........300.........310.........320.........330.........340......
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Query Sequence  QMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPISQKAPAMLADVI
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Template Sequence  GDTTSFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA. GRSPFDQNTEDYLFQVILEKQI. . RIPRSMSVKAASVL
Template Known Secondary structure  T

B


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   398.400.........410.........420.........430........ .440.........450.........460 .........470....
 
   347..350......... 360.....
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Query Sequence  KKCWIRDPQQRPT. . . . . . MSQVVQ
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Template Sequence  KSFLNKDPKERLGCLPQTGFADIQG
Template Known Secondary structure  T
SSSTTSTTTSTTT
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   485....490.........500.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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