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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank40Aligned Residues269
% Identity20%Templatec4dn5A_
PDB info PDB header:transferaseChain: A: PDB Molecule:mitogen-activated protein kinase kinase kinase 14; PDBTitle: crystal structure of nf-kb-inducing kinase (nik)
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   106...110.........120.........130.........140.........150.........160.........170.........180.....
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Query Sequence  QSWELNHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGVAAI
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Template Sequence  YEYREEVHWATHQLRLGRGSFGEVHRMEDKQTGF. . QCAVKKVRLEVFRA. . . . . . . EELMACAGLTSPRIVPLYGAVRE
Template Known Secondary structure  TB

BTTT
SS
S
SS
TTT

..TTT

T.......TTSS


TTB

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   391........400.........410.........420.... .....430........ .440.........450.........460.
 
   186...190.........200.........210.........220.........230.........240.........250 .........260...
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Query Sequence  DEPLLVVMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNILYGKG. . VAKVSDFGLSRVG
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Template Sequence  GPWVNIFMELLEGGSLGQLVKEQGCLPEDRALYYLGQALEGLEYLHSRRILHGDVKADNVLLSSDGSHAALCDFGHAVCL
Template Known Secondary structure  TT


TT
BSS

TT
S

SGGG
TTS




TT

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   462.......470.........480.........490.........500.........510.........520.........530.........540.
 
   264.....270.........280.........290.........300.........310.........320........ .330.........340..
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Query Sequence  TEYQMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRD. DYRMPISQKAPAML
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Template Sequence  . . . . . . . QIPGTETHMAPEVVLGRSCDAKVDVWSSCCMMLHMLN. GCHPWTQFFRGPLCLKIASEPPPVREIPPSCAPLT
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S
GGG

TT



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S

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   542.......550.........560.........570........ .580.........590.........600.........610...
 
   343......350.........360.........370.........380.........390.
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Query Sequence  ADVIKKCWIRDPQQRPTMSQVVQMMYEITGKKDKTSVNKSTGQLRAKMM
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Template Sequence  AQAIQEGLRKEPIHRVSAAELGGKVNRALQQVGGLKSPWRGEYKEPRHP
Template Known Secondary structure  S
SSTTSS

TSS
S
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   627..630.........640.........650.........660.........670.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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