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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank213Aligned Residues267
% Identity18%Templatec3op5B_
PDB info PDB header:transferaseChain: B: PDB Molecule:serine/threonine-protein kinase vrk1; PDBTitle: human vaccinia-related kinase 1
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   109110.........120... ......130....... ..140.........150......... 160.........170....
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Query Sequence  ELNHADITMTKVLGE. . GAFGEVKLGTLKMG. . . STTVDVAIKVAKLEKVTKEQIK. . . . . . . . . EIITEARLMRGFDHK
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Template Sequence  EIITDMAAAAWKVGLPIGQFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYL
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   27..30.........40.........50.........60.........70.........80.........90.........100......
 
   175....180.... .....190.........200......... 210.........220.........230.........240.........
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Query Sequence  NVVKCYGVAA. . . . IDEPLLVVMELVPGGALDKYLQKNS. SVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNILYGK
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Template Sequence  GVPKYWGSGLHDKNGKSYRFMIMDRF. GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNY
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   109110.........120.........130.... .....140.........150.........160.........170.........180.......
 
   250. ........260..... ....270.........280.........290.........300.........310........
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Query Sequence  GV. . . AKVSDFGLSRVGTE. . . . . . . . YQMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLV
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Template Sequence  KNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLT. GHLPWEDNLK
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   188.190.........200.........210.........220.........230.........240.........250...... ...260......
 
   319320.........330. ........340.........350.........360.........370.......
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Query Sequence  VQVHQKVGRDDYR. . . . . . . . . MPISQKAPAMLADVIKKCWIRDPQQRPTMSQVVQMMYEITGKKDKT
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Template Sequence  DPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSK
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   267..270.........280.........290.........300.........310.........320.........330....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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