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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank137Aligned Residues248
% Identity23%Templatec4ithB_
PDB info PDB header:transferase/transferase inhibitorChain: B: PDB Molecule:receptor-interacting serine/threonine-protein kinase 1; PDBTitle: crystal structure of rip1 kinase in complex with necrostatin-1 analog
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   120...... ...130.........140.........150.........160.........170.........180.........190....
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Query Sequence  VLGEGAF. . . . . GEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDEPLLVVME
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Template Sequence  KMKSSDFLESAELKVSLAFHRTQG. . . LMIMKTVYKGPNCIEHNEALLEEAKMMNRLRHSRVVKLLGVIIEEGKYSLVME
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GGGB
S

B

TTT...S
TT


T

BTTB

TT
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   11........20.........30.... .....40.........50.........60.........70.........80.......
 
   195....200.........210.........220.........230.........240..... ....250.........260..... ....270.
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Query Sequence  LVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRVGTE. . YQMDPS
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Template Sequence  YMEKGNLMHVLKAEMSTPLSVKGRIILEIIEGMAYLHGKGVIHKDLKPENILVDNDFHIKIADLGLASFKMWSKLNNEEH
Template Known Secondary structure 

TT
BTSSS


TT


S

SGGG
TT



TT
TT
STTSSS
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   94.....100.........110.........120.........130.........140.........150.........160.........170...
 
   272.......280...... ...290.........300.........310.........320.........330...... ...340......
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Query Sequence  KRVPIRWLSPETIVS. . FLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPISQ. . . KAPAMLADVI
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Template Sequence  NEGTLYYMAPEHLNDVNAKPTEKSDVYSFAVVLWAIFA. NKEPYENAIAEQQLIMAIKSGNRPDVDDITEYCPREIISLM
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GGGTS
GGGTT
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   174.....180.........190.........200.........210. ........220.........230.........240.........250..
 
   347..350.........360.........370.
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Query Sequence  KKCWIRDPQQRPTMSQVVQMMYEIT
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Template Sequence  KLCWEANPEARPTFPGIEEKFRPFY
Template Known Secondary structure  T
SSGGGS

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   265....270.........280.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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