Return to main results Retrieve Phyre Job Id

Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank126Aligned Residues241
% Identity25%Templatec2r7bA_
PDB info PDB header:signaling protein, transferaseChain: A: PDB Molecule:phosphoinositide-dependent protein kinase 1; PDBTitle: crystal structure of the phosphoinositide-dependent kinase-2 1 (pdk-1)catalytic domain bound to a dibenzonaphthyridine3 inhibitor
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   113......120.........130.........140.........150... ......160.........170.........180.........190.
Predicted Secondary structure 











.







Query SS confidence 








































.





































Query Sequence  ADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKV. TKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDEPLLV
Query Conservation          

 
 

 
             



       .          
  

  
 
 


             
Alig confidence 


























..











.





































Template Conservation    
     

 
 

 

 
     
 .. 



 
                
  

  
 
  

              
Template Sequence  EDFKFGKILGEGSFSTVVLARELATSR. . EYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYF
Template Known Secondary structure  GG
SS
TTT

..TT
T


TTB


SS
Template Predicted Secondary structure 









..























Template SS confidence 















































































   80.........90.........100...... ...110.........120.........130.........140.........150.......
 
   192.......200.........210.........220.........230.........240..... ....250.........260.........270
Predicted Secondary structure 




























.



















Query SS confidence 





















































.
























Query Sequence  VMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRVGTEYQMDP
Query Conservation 
 
    
 
                     
   
  

     
 


  
 .       

 




          
Alig confidence 





















































.

















.......
Template Conservation 
 
      
                     
           
 
       
                   .......
Template Sequence  GLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL. . . . . . .
Template Known Secondary structure 

TT
BSSS

TT




TTT
TTS



TT

.......
Template Predicted Secondary structure 













































.......
Template SS confidence 















































































   158.160.........170.........180.........190.........200.........210.........220.........230
 
   271........280.........290.........300.........310.........320.........330.........340.........350
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  SKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPISQKAPAMLADVIKKCW
Query Conservation         
 


          






  
 

 
 
  
            
                
  

  

Alig confidence  .



































.




















..


















Template Conservation  .          
      
    





  



 
.
  

           
    ..       
    


   
Template Sequence  . FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA. GLPPFRAGNEYLIFQKIIKLE. . YDFPEKFFPKARDLVEKLL
Template Known Secondary structure  .



GGG

SS


.SS
S


SST
..



SSS
TTS
Template Predicted Secondary structure  .






















.











..








Template SS confidence 















































































   242.......250.........260.........270....... ..280.........290........ .300.........310.......
 
   351........360......
Predicted Secondary structure 





Query SS confidence 















Query Sequence  IRDPQQRPTMSQVVQM
Query Conservation    

  


   
   
Alig confidence 















Template Conservation    

  
 
  
 
  
Template Sequence  VLDATKRLGCEEMEGY
Template Known Secondary structure 
SSTTSSTTSGGGTT
Template Predicted Secondary structure 







Template SS confidence 















   318.320.........330...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D