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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank124Aligned Residues252
% Identity24%Templatec2y94A_
PDB info PDB header:transferaseChain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit alpha-1; PDBTitle: structure of an active form of mammalian ampk
Resolution3.24 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   109110.........120.........130.........140.........150.. .......160.........170.........180.......
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Query Sequence  ELNHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEK. VTKEQIKEIITEARLMRGFDHKNVVKCYGVAAIDE
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Template Sequence  RVKIGHYILGDTLGVGTFGKVKVGKHELTGH. . KVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPS
Template Known Secondary structure 

TT

SSS
TTT

..TTTTT


TTB


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   10.........20.........30.........40 .........50.........60.........70.........80.......
 
   188.190.........200.........210.........220.........230.........240..... ....250.........260......
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Query Sequence  PLLVVMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRVGTEY
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Template Sequence  DIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG
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SSTTSSSS

TTT
S

SGGG
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   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   267..270.........280.........290.........300.........310.........320.........330.........340......
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Query Sequence  QMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPISQKAPAMLADVI
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Template Sequence  EFLRSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLC. GTLPFDDDHVPTLFKKICDGIF. . YTPQYLNPSVISLL
Template Known Secondary structure 

B


S
STT

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B
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   168.170.........180.........190.........200........ .210.........220.........230 .........240....
 
   347..350.........360.....
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Query Sequence  KKCWIRDPQQRPTMSQVVQ
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Template Sequence  KHMLQVDPMKRATIKDIRE
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SSTTTS

T
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   246...250.........260....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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