Return to main results Retrieve Phyre Job Id

Job DescriptionQ20933
Confidence99.40%DateFri May 3 21:32:28 BST 2013
Rank406Aligned Residues79
% Identity15%Templatec3gxxB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.... .....30.........40.........50.........60. ........70.........
Predicted Secondary structure 











..
















...











Query SS confidence 



















. .




































. . .

















Query Sequence  EQPFFHGLLPREEVKLLLQK. . NGDYLMRTSEPQGQARHLIISVMQNETSQEVAHYVIR. . . TSDGAYSITDKIKFGTLT
Query Conservation     



 
 
   
 

  .. 
 



 
        
 


        
 
  
 ...             
 

 
Alig confidence 





.












..

























....






...

















Template Conservation   

 
 .  

 


  
     
 



 
      
 



     ....  
  
       
         
 

 
Template Sequence  NHPYYF. PFNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDL. . . . FQHVDIQEXEKEXGKVLVVEGQRYHDLD
Template Known Secondary structure  T
TTB
.


TTS
TT


STT

TT....





SSS
SS
Template Predicted Secondary structure 





.


















....









Template SS confidence 















































































   910.... .....20.........30.........40.........50..... ....60.........70.........80...
 
   80........
Predicted Secondary structure 
Query SS confidence 








Query Sequence  ELVNHHKQA
Query Conservation   

  
   
Alig confidence 








Template Conservation 


  
  
Template Sequence  QIIVEYLQN
Template Known Secondary structure 
Template Predicted Secondary structure 

Template SS confidence 








   88.90......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D