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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank68Aligned Residues239
% Identity28%Templatec2bmcD_
PDB info PDB header:transferaseChain: D: PDB Molecule:serine threonine-protein kinase 6; PDBTitle: aurora-2 t287d t288d complexed with pha-680632
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   107..110.........120.........130.........140.........150....... ..160.........170.........180.....
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Query Sequence  SWELNHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQ. IKEIITEARLMRGFDHKNVVKCYGVAAI
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Template Sequence  QWAL. . EDFEIGRPLGKGKFGNVYLAREKQSKF. . ILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD
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G..GG
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TT


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   127..130 .........140.........150....... ..160.........170.........180.........190.........200..
 
   186...190.........200.........210.........220.........230.........240..... ....250.........260....
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Query Sequence  DEPLLVVMELVPGGALDKYLQKNSSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNI. LYGKGVAKVSDFGLSRVGT
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Template Sequence  ATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS. . . .
Template Known Secondary structure  SS


TT
BSS

TTT




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S

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   203......210.........220.........230.........240.........250.........260.........270........
 
   265....270.........280.........290.........300.........310.........320.........330.........340....
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Query Sequence  EYQMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPISQKAPAMLAD
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Template Sequence  . . . . . . . . . VTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV. GKPPFEANTYQETYKRISRVEF. . TFPDFVTEGARD
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GGG

GGGTTTTSSGGG.SS
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   279280.........290.........300.........310.. .......320.........330.... .....340......
 
   345....350.........360.....
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Query Sequence  VIKKCWIRDPQQRPTMSQVVQ
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Template Sequence  LISRLLKHNPSQRPMLREVLE
Template Known Secondary structure  S
SSGGGS

T
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   359360.........370.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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