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Job DescriptionQ20933
Confidence98.16%DateFri May 3 21:32:28 BST 2013
Rank417Aligned Residues185
% Identity12%Templatec3r78B_
PDB info PDB header:transferaseChain: B: PDB Molecule:aminoglycoside 3'-phosphotransferase apha1-iab; PDBTitle: crystal structure of the aminoglycoside phosphotransferase aph(3')-ia,2 atp-bound
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   94.....100.........110.........120.........130.........140.........150.........160.........170. .
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Query Sequence  VASSVLVNPIGRQSWELNHADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGF. D
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Template Sequence  QRETSCSRPRLNSNLDADLYGYRWARDNVGQSGATIYRLYGKPNAP. . ELFLKHG. . . . . KGSVANDVTDEXVRLNWLTA
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SSSTTTT


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   5....10.........20.........30.........40.........50 ....... ..60.........70.......
 
   173......180.........190.........200.........210.........220...
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Query Sequence  HKNVVKCYGVAAIDEPLLVVMELVPGGALDKYLQKNSSVQWPEKLDIIAQV. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FXPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRXN
Template Known Secondary structure  TS




SS


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GGGS
GGG


B

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   78.80.........90.........100.........110.........120.........130.........140.........150.......
 
   224.....230.........240.........250... ......260.........270.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . AAGLAYIHSKNIIHRDIAARNILYGKGVAK. VSDFGLSRVGTEYQMDPSKRVPIR
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Template Sequence  NGLVDASDFDDERNGWPVEQVWKEXHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLG
Template Known Secondary structure  TT


GGG

GGGTT

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TT
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   158.160.........170.........180.........190.........200.........210.........220.........230.......
 
   278.280.....
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Query Sequence  WLSPETIV
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Template Conservation          
Template Sequence  EFSPSLQK
Template Known Secondary structure  TT
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   238.240.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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