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Job DescriptionQ20933
Confidence100.00%DateFri May 3 21:32:28 BST 2013
Rank83Aligned Residues243
% Identity24%Templatec2a1aB_
PDB info PDB header:protein synthesis/transferaseChain: B: PDB Molecule:interferon-induced, double-stranded rna-activated protein PDBTitle: pkr kinase domain-eif2alpha complex
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   112.......120.........130.........140.........150.........160.........170.........180.....
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Query Sequence  HADITMTKVLGEGAFGEVKLGTLKMGSTTVDVAIKVAKLEKVTKEQIKEIITEARLMRGFDHKNVVKCYGVAAI. . . . . .
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Template Sequence  GMDFKEIELIGSGGFGQVFKAKHRIDGK. . TYVIKRVKYNN. . . . . . EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPE
Template Known Secondary structure 
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S......GGGGTT


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   264.....270.........280.........290. ........300.. .......310.........320.........330.....
 
   186...190.........200........ .210.........220.........230.........240.........250 ......
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Query Sequence  . . . . . . DEPLLVVMELVPGGALDKYLQKN. . SSVQWPEKLDIIAQVAAGLAYIHSKNIIHRDIAARNILYGKG. VAKVSD
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Template Sequence  TSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGD
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   336...340.........350.........360.........370.........380.........390.........400.........410.....
 
   257..260.........270.........280.........290.........300.........310.........320.........330......
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Query Sequence  FGLSRVGTEYQMDPSKRVPIRWLSPETIVSFLYTPQTDVFAFSILCWEVIENGAQPYPEMLVVQVHQKVGRDDYRMPISQ
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Template Sequence  FGLVTSLKNDGKRRSK. GTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLR. . . . . . . DGIISD
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   433......440........ .450.........460.........470.........480.........490........ .500....
 
   337..340.........350.........360.........370
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Query Sequence  KAPAMLADVIKKCWIRDPQQRPTMSQVVQMMYEI
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Template Sequence  IFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVW
Template Known Secondary structure  TS
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SSGGGS

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   506...510.........520.........530.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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