Job Description Q9TYT3 Confidence 100.00% Date Sat Apr 13 13:01:24 BST 2013 Rank 3 Aligned Residues 137 % Identity 23% Template c3sv1C_ PDB info PDB header:protein binding Chain: C: PDB Molecule:amyloid beta a4 precursor protein-binding family a member PDBTitle: crystal structure of app peptide bound rat mint2 parm Resolution 3.30 Å Model Dimensions (Å) X:67.105 Y:39.111 Z:35.892

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	E	E	L	R	S	S	G	V	S	L	S	A	T	Y	L	G	S	V	P	V	V	E	S	I	N	V	M	V	S	E	M	R	V	Q	V	V	S	E	C	I	Q	H	V	A	A	T	V	G	V	T	A	A	R	E	I	N	P	V	V	S	R	V	I	G	E	V	K	K	E	N	F	P	V	D	I	N	I	S
Query Conservation
Alig confidence										.																				.																														.	.	.	.	.	.	.	.	.	.
Template Conservation										.																				.																														.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	E	D	L	I	D	G	.	I	I	F	A	A	N	Y	L	G	S	T	Q	L	L	S	E	R	N	P	.	S	K	N	I	R	M	M	Q	A	Q	E	A	V	S	R	V	K	R	M	Q	K	A	A	K	I	K	K	K	A	.	.	.	.	.	.	.	.	.	.	N	Q	T	L	T	E	V	D	L	F	I	S
Template Known Secondary structure										.																	S			.																											T	T	T	.	.	.	.	.	.	.	.	.	.				S
Template Predicted Secondary structure										.																				.																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		363	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.											.	420	.	.	.	.	.	.	.	.	.	430
		88	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		S	K	M	I	K	I	I	K	.	.	Q	S	R	L	I	Q	R	H	P	F	S	F	F	S	F	G	A	Q	G	Q	K	G	T	D	T	E	L	M	F	G	Y	I	A	K	N	K	D	G	T	D	R	R	C	H	V	V	F	I	E	D	V	H	K	L	I	D	V	L	T	T	A	I	N	V	N	T	F	D
Query Conservation										.	.
Alig confidence										.	.																					.	.	.	.	.	.											.
Template Conservation																																.	.	.	.	.	.											.
Template Sequence		T	Q	R	I	K	V	L	N	A	D	T	Q	E	T	M	M	D	H	A	L	R	T	I	S	Y	I	A	D	I	G	.	.	.	.	.	.	N	I	V	V	L	M	A	R	R	K	.	Q	Y	K	M	I	C	H	V	F	E	S	E	D	A	Q	L	I	A	Q	S	I	G	Q	A	F	S	V	A	Y	Q	E
Template Known Secondary structure		S	S							T	T	T									T	T	T								T	.	.	.	.	.	.	T										.												T	T																	T	T
Template Predicted Secondary structure																																.	.	.	.	.	.											.
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.							.	.	.	.	470	.	.	.	.	.		.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D