Job Description Q9TYT3 Confidence 99.97% Date Sat Apr 13 13:01:24 BST 2013 Rank 5 Aligned Residues 134 % Identity 17% Template c3d8dA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family b member PDBTitle: crystal structure of the human fe65-ptb1 domain Resolution 2.20 Å Model Dimensions (Å) X:38.836 Y:46.045 Z:36.838

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	V	S	L	S	A	T	Y	L	G	S	V	P	V	V	E	S	I	N	V	M	V	S	E	M	R	V	Q	V	V	S	E	C	I	Q	H	V	A	A	T	V	G	V	T	A	A	R	E	I	N	P	V	V	S	R	V	I	G	E	V	K	K	E	N	F	P	V	D	I	N	I	S	S	K	M	I	K	I	I
Query Conservation
Alig confidence																					.	.																													.	.	.	.	.	.	.	.	.
Template Conservation																					.	.																													.	.	.	.	.	.	.	.	.
Template Sequence		G	I	K	C	F	A	V	R	S	L	G	W	V	E	M	T	E	E	E	.	.	L	A	P	G	R	S	S	V	A	V	N	N	C	I	R	Q	L	S	Y	H	K	N	N	L	H	D	P	M	.	.	.	.	.	.	.	.	.	S	G	G	W	G	E	G	K	D	L	L	L	Q	L	E	D	E	T	L	K	L	V
Template Known Secondary structure																		G	G	G	.	.	G	S	T	T	T													T	T								T	T	.	.	.	.	.	.	.	.	.	S	T	T		S	T	T									T	T
Template Predicted Secondary structure																					.	.																													.	.	.	.	.	.	.	.	.
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.			.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.										.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		95			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure			.	.																																																			.
Query SS confidence			.	.																																																			.
Query Sequence		K	.	.	Q	S	R	L	I	Q	R	H	P	F	S	F	F	S	F	G	A	Q	G	Q	K	G	T	D	T	E	L	M	F	G	Y	I	A	K	N	K	D	G	T	D	R	R	C	H	V	V	F	I	E	D	.	V	H	K	L	I	D	V	L	T	T	A	I	N	V	N	T	F	D
Query Conservation			.	.																																																			.
Alig confidence			.	.																					.	.	.																												.														.
Template Conservation																									.	.	.																																										.
Template Sequence		E	P	Q	S	Q	A	L	L	H	A	Q	P	I	I	S	I	R	V	W	G	V	G	R	.	.	.	D	S	E	R	D	F	A	Y	V	A	R	D	K	L	T	Q	M	L	K	C	H	V	F	R	C	E	A	P	A	K	N	I	A	T	S	L	H	E	I	C	S	.	K	I	M	A
Template Known Secondary structure			T	T	T									G	G	G									.	.	.													T	T	T											S	S															.
Template Predicted Secondary structure																									.	.	.																																										.
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.				.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.		.	500	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D