Job Description Q9TYT3 Confidence 99.95% Date Sat Apr 13 13:01:24 BST 2013 Rank 12 Aligned Residues 143 % Identity 18% Template c2yszA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the chimera of the c-terminal pid2 domain of fe65l and the c-terminal tail peptide of app Resolution UNK Model Dimensions (Å) X: Y: Z:

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	F	A	E	E	L	R	S	S	G	V	S	L	S	A	T	Y	L	G	S	V	P	V	V	E	S	I	N	V	M	V	S	E	M	R	V	Q	V	V	S	E	C	I	Q	H	V	A	A	T	V	G	V	T	A	A	R	E	I	N	P	V	V	S	R	V	I	G	E	V	K	K	E	N	F	P	V	D	I	N
Query Conservation
Alig confidence											.	.	.																		.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.																		.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	T	P	K	T	E	L	V	Q	.	.	.	K	F	R	V	Q	Y	L	G	M	L	P	V	D	R	P	V	G	.	.	.	.	.	.	.	M	D	T	L	N	S	A	I	E	N	L	M	T	S	S	S	K	E	D	W	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	M	N
Template Known Secondary structure											.	.	.													S	S	S	S		.	.	.	.	.	.	.															S		T	T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.																		.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.								.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.																			.	.	.	.
		86	.	.	.	90	.	.	.	.	.			.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure												.	.				.
Query SS confidence												.	.				.
Query Sequence		I	S	S	K	M	I	K	I	I	K	.	.	Q	S	R	.	L	I	Q	R	H	P	F	S	F	F	S	F	G	A	Q	G	Q	K	G	T	D	T	E	L	M	F	G	Y	I	A	K	N	K	D	G	T	D	R	R	C	H	V	V	F	I	E	D	V	H	K	L	I	D	V	L	T	T	A	I	N	V	N	T	F
Query Conservation												.	.				.
Alig confidence												.	.				.																				.	.	.	.								.																		.	.	.										.
Template Conservation																																					.	.	.	.								.																		.	.	.										.
Template Sequence		V	A	D	A	T	V	T	V	I	S	E	K	N	E	E	E	V	L	V	E	C	R	V	R	F	L	S	F	M	G	V	G	K	D	V	.	.	.	.	H	T	F	A	F	I	M	.	D	T	G	N	Q	R	F	E	C	H	V	F	W	C	E	P	N	.	.	.	A	A	N	V	S	E	A	V	Q	.	A	A	C
Template Known Secondary structure				T	T							S	S		S	S								T	T	T								S	S	T	.	.	.	.	T							.		S	S	S	S										S	S		.	.	.	S	T	T							.
Template Predicted Secondary structure																																					.	.	.	.								.																		.	.	.										.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.					.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.		.	.	130
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	Q	A	N	A	S	T	S	N	D	G	F	T	V	P	A	P	P	M	R	H	R	S
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		S	.	G	P	S	S	G	I	E	G	R	G	S	S	G	S	S	G	S	S	G	S	S	G
Template Known Secondary structure			.	S												S			S	S		S	S	S
Template Predicted Secondary structure			.
Template SS confidence
		131		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D